PFRMAT SS 
TARGET T0067 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t67.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 9.38262 
METHOD 
MODEL 1 
M C 0.83 
P C 0.63 
V C 0.49 
D C 0.45 
L E 0.43 
S E 0.42 
K C 0.42 
W C 0.44 
S C 0.54 
G C 0.66 
P C 0.57 
L C 0.47 
S C 0.44 
L C 0.46 
Q C 0.42 
E C 0.45 
V C 0.61 
D C 0.74 
E C 0.84 
Q C 0.93 
P C 0.88 
Q C 0.71 
H E 0.64 
P E 0.90 
L E 0.95 
H E 0.96 
V E 0.95 
T E 0.90 
Y E 0.66 
A C 0.79 
G C 0.81 
A C 0.70 
A C 0.56 
V C 0.40 
D C 0.40 
E C 0.49 
L C 0.60 
G C 0.84 
K C 0.81 
V C 0.60 
L C 0.63 
T C 0.75 
P C 0.65 
T C 0.52 
Q H 0.48 
V C 0.53 
K C 0.67 
N C 0.81 
R C 0.92 
P C 0.94 
T C 0.77 
S E 0.58 
I E 0.73 
S E 0.73 
W E 0.58 
D C 0.66 
G C 0.74 
L C 0.80 
D C 0.82 
S C 0.84 
G C 0.90 
K C 0.77 
L E 0.64 
Y E 0.90 
T E 0.97 
L E 0.98 
V E 0.96 
L E 0.91 
T E 0.66 
D C 0.81 
P C 0.88 
D C 0.75 
A C 0.78 
P C 0.90 
S C 0.91 
R C 0.83 
K C 0.85 
D C 0.92 
P C 0.83 
K C 0.65 
Y C 0.49 
R C 0.44 
E C 0.43 
W C 0.58 
H C 0.52 
H E 0.77 
F E 0.94 
L E 0.97 
V E 0.97 
V E 0.94 
N E 0.79 
M E 0.56 
K C 0.67 
G C 0.82 
N C 0.91 
D C 0.79 
I C 0.70 
S C 0.72 
S C 0.77 
G C 0.84 
T C 0.64 
V E 0.68 
L E 0.81 
S E 0.79 
D E 0.72 
Y E 0.55 
V C 0.72 
G C 0.91 
S C 0.87 
G C 0.89 
P C 0.94 
P C 0.88 
K C 0.80 
G C 0.85 
T C 0.91 
G C 0.89 
L C 0.68 
H E 0.69 
R E 0.89 
Y E 0.95 
V E 0.97 
W E 0.98 
L E 0.98 
V E 0.96 
Y E 0.87 
E E 0.64 
Q C 0.66 
D C 0.89 
R C 0.92 
P C 0.87 
L C 0.72 
K C 0.66 
C C 0.63 
D C 0.58 
E C 0.53 
P C 0.57 
I C 0.58 
L C 0.65 
S C 0.72 
N C 0.80 
R C 0.88 
S C 0.84 
G C 0.86 
D C 0.90 
H C 0.80 
R C 0.81 
G C 0.86 
K C 0.76 
F C 0.64 
K C 0.51 
V H 0.67 
A H 0.84 
S H 0.85 
F H 0.91 
R H 0.91 
K H 0.88 
K H 0.83 
Y H 0.68 
E C 0.54 
L C 0.64 
R C 0.77 
A C 0.78 
P C 0.68 
V H 0.69 
A H 0.71 
G H 0.73 
T H 0.74 
C H 0.69 
Y H 0.67 
Q H 0.68 
A H 0.71 
E H 0.66 
W H 0.78 
D H 0.83 
D H 0.76 
Y C 0.54 
V C 0.54 
P H 0.74 
K H 0.85 
L H 0.83 
Y H 0.89 
E H 0.90 
Q H 0.87 
L H 0.67 
S C 0.70 
G C 0.81 
K C 0.86 
END 
