PFRMAT SS 
TARGET T0068 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t68.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 11.2842 
METHOD 
MODEL 1 
S C 0.81 
D C 0.71 
S C 0.67 
R C 0.58 
T C 0.62 
V C 0.68 
S C 0.74 
E C 0.88 
P C 0.81 
K C 0.66 
T C 0.55 
P E 0.54 
S E 0.58 
S E 0.56 
C E 0.47 
T C 0.62 
T C 0.73 
L C 0.67 
K C 0.66 
A C 0.79 
D C 0.91 
S C 0.89 
S C 0.81 
T C 0.79 
A C 0.62 
T H 0.77 
S H 0.94 
T H 0.94 
I H 0.98 
Q H 0.99 
K H 0.99 
A H 0.99 
L H 0.99 
N H 0.97 
N H 0.91 
C H 0.52 
D C 0.79 
Q C 0.93 
G C 0.96 
K C 0.77 
A E 0.86 
V E 0.96 
R E 0.97 
L E 0.93 
S E 0.69 
A C 0.57 
G C 0.54 
S C 0.61 
T C 0.70 
S E 0.50 
V E 0.71 
F E 0.78 
L E 0.68 
S C 0.54 
G C 0.82 
P C 0.82 
L C 0.54 
S C 0.50 
L C 0.64 
P C 0.86 
S C 0.91 
G C 0.91 
V C 0.76 
S E 0.62 
L E 0.84 
L E 0.92 
I E 0.90 
D E 0.85 
K E 0.72 
G E 0.59 
V E 0.66 
T E 0.74 
L E 0.82 
R E 0.85 
A E 0.72 
V C 0.63 
N C 0.86 
N C 0.85 
A C 0.66 
K C 0.64 
S C 0.60 
F C 0.58 
E C 0.65 
N C 0.74 
A C 0.82 
P C 0.86 
S C 0.82 
S C 0.74 
C C 0.72 
G C 0.59 
V C 0.53 
V C 0.64 
D C 0.70 
K C 0.80 
N C 0.89 
G C 0.90 
K C 0.90 
G C 0.87 
C C 0.80 
D C 0.74 
A C 0.55 
F E 0.56 
I E 0.71 
T E 0.69 
A E 0.51 
V C 0.72 
S C 0.75 
T C 0.81 
T C 0.90 
N C 0.70 
S E 0.56 
G E 0.75 
I E 0.73 
Y C 0.50 
G C 0.76 
P C 0.78 
G C 0.58 
T E 0.67 
I E 0.68 
D C 0.49 
G C 0.73 
Q C 0.84 
G C 0.79 
G C 0.70 
V C 0.48 
K E 0.49 
L E 0.56 
Q E 0.48 
D C 0.65 
K C 0.89 
K C 0.88 
V C 0.78 
S C 0.57 
W E 0.55 
W E 0.56 
E E 0.47 
L C 0.54 
A C 0.63 
A C 0.67 
D C 0.75 
A C 0.83 
K C 0.90 
V C 0.87 
K C 0.84 
K C 0.73 
L C 0.67 
K C 0.74 
Q C 0.76 
N C 0.83 
T C 0.91 
P C 0.87 
R C 0.66 
L E 0.49 
I E 0.67 
Q E 0.69 
I E 0.56 
N C 0.64 
K C 0.71 
S C 0.78 
K C 0.85 
N C 0.75 
F C 0.63 
T E 0.59 
L E 0.59 
Y C 0.58 
N E 0.54 
V E 0.71 
S E 0.73 
L E 0.69 
I C 0.48 
N C 0.83 
S C 0.91 
P C 0.82 
N C 0.62 
F E 0.62 
H E 0.86 
V E 0.88 
V E 0.85 
F E 0.68 
S C 0.63 
D C 0.77 
G C 0.84 
D C 0.88 
G C 0.73 
F E 0.54 
T E 0.77 
A E 0.79 
W E 0.71 
K E 0.74 
T E 0.81 
T E 0.85 
I E 0.84 
K E 0.66 
T C 0.73 
P C 0.87 
S C 0.89 
T C 0.92 
A C 0.92 
R C 0.94 
N C 0.92 
T C 0.90 
D C 0.81 
G E 0.63 
I E 0.85 
D E 0.88 
P E 0.80 
M E 0.59 
S C 0.61 
S C 0.82 
K C 0.86 
N C 0.52 
I E 0.85 
T E 0.94 
I E 0.93 
A E 0.86 
Y E 0.66 
S C 0.50 
N C 0.46 
I C 0.49 
A C 0.66 
T C 0.85 
G C 0.90 
D C 0.84 
D C 0.73 
N C 0.60 
V E 0.61 
A E 0.74 
I E 0.63 
K C 0.71 
A C 0.90 
Y C 0.93 
K C 0.90 
G C 0.92 
R C 0.91 
A C 0.84 
E C 0.79 
T C 0.83 
R C 0.84 
N C 0.55 
I E 0.82 
S E 0.93 
I E 0.93 
L E 0.87 
H E 0.69 
N E 0.53 
D C 0.50 
F C 0.71 
G C 0.89 
T C 0.88 
G C 0.95 
H C 0.87 
G E 0.69 
M E 0.94 
S E 0.98 
I E 0.98 
G E 0.94 
S E 0.82 
E E 0.56 
T C 0.75 
M C 0.73 
G C 0.59 
V C 0.64 
Y C 0.75 
N E 0.53 
V E 0.83 
T E 0.89 
V E 0.86 
D E 0.72 
D E 0.56 
L E 0.52 
K E 0.58 
M E 0.54 
N C 0.53 
G C 0.74 
T C 0.78 
T C 0.87 
N C 0.86 
G E 0.53 
L E 0.92 
R E 0.97 
I E 0.98 
K E 0.95 
S E 0.87 
D E 0.63 
K C 0.67 
S C 0.85 
A C 0.87 
A C 0.90 
G C 0.88 
V C 0.55 
V E 0.60 
N E 0.62 
G E 0.75 
V E 0.82 
R E 0.82 
Y E 0.73 
S E 0.60 
N E 0.55 
V E 0.54 
V E 0.59 
M E 0.49 
K C 0.61 
N C 0.74 
V C 0.75 
A C 0.84 
K C 0.89 
P C 0.83 
I E 0.67 
V E 0.89 
I E 0.88 
D E 0.78 
T E 0.61 
V C 0.47 
Y C 0.56 
E C 0.67 
K C 0.79 
K C 0.93 
E C 0.93 
G C 0.83 
S C 0.92 
N C 0.89 
V E 0.55 
P E 0.85 
D E 0.92 
W E 0.91 
S E 0.82 
D E 0.79 
I E 0.82 
T E 0.87 
F E 0.77 
K C 0.49 
D C 0.62 
V C 0.77 
T C 0.89 
S C 0.82 
E C 0.86 
T C 0.82 
K C 0.75 
G C 0.50 
V E 0.84 
V E 0.93 
V E 0.96 
L E 0.96 
N E 0.89 
G E 0.60 
E C 0.82 
N C 0.91 
A C 0.93 
K C 0.93 
K C 0.80 
P C 0.65 
I C 0.62 
E C 0.48 
V E 0.64 
T E 0.77 
M E 0.73 
K E 0.59 
N E 0.59 
V E 0.61 
K E 0.66 
L E 0.67 
T E 0.54 
S C 0.68 
D C 0.91 
S C 0.91 
T C 0.86 
W C 0.66 
Q E 0.56 
I E 0.74 
K E 0.76 
N E 0.64 
V C 0.57 
N C 0.68 
V C 0.72 
K C 0.86 
K C 0.88 
END 
