REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0069AL277_1_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : DEERFIELD 
REMARK  ---------------------------------------------------------- 
TARGET T0069  
AUTHOR 8120-3487-1357  
REMARK Matrix Used: 1rdo BS_90_25  
REMARK Matrix Used: 1afa BS_30_25   
REMARK Alignment Method Used: Quasi-Global Dynamic Programming  
METHOD Sequence-Structure alignment based on the environments  
METHOD published in: Deerfield, Holland-Minkley, Geigel, and   
METHOD Nicholas 1997. "Classification of the Environment of   
METHOD Protein Residues" J. Prot. Chem. 16:441-446.  
METHOD   
METHOD This test uses our latest (unpublished) environment   
METHOD classifications and extentions.  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1afa_3 
ATOM      1  N   ALA     5     -12.038  13.180  44.191  1.00  0.00              
ATOM      2  CA  ALA     5     -11.392  13.776  42.984  1.00  0.00              
ATOM      3  C   ALA     5     -10.311  14.816  43.303  1.00  0.00              
ATOM      4  O   ALA     5      -9.138  14.468  43.386  1.00  0.00              
ATOM      5  N   LEU     6     -10.729  16.056  43.564  1.00  0.00              
ATOM      6  CA  LEU     6      -9.834  17.188  43.836  1.00  0.00              
ATOM      7  C   LEU     6      -8.463  16.906  44.451  1.00  0.00              
ATOM      8  O   LEU     6      -7.437  17.255  43.870  1.00  0.00              
ATOM      9  N   LYS     7      -8.445  16.264  45.611  1.00  0.00              
ATOM     10  CA  LYS     7      -7.194  15.973  46.289  1.00  0.00              
ATOM     11  C   LYS     7      -6.341  14.939  45.546  1.00  0.00              
ATOM     12  O   LYS     7      -5.115  15.039  45.515  1.00  0.00              
ATOM     13  N   GLN     8      -6.990  13.991  44.883  1.00  0.00              
ATOM     14  CA  GLN     8      -6.252  12.986  44.127  1.00  0.00              
ATOM     15  C   GLN     8      -5.650  13.683  42.905  1.00  0.00              
ATOM     16  O   GLN     8      -4.492  13.453  42.558  1.00  0.00              
ATOM     17  N   ARG     9      -6.435  14.563  42.289  1.00  0.00              
ATOM     18  CA  ARG     9      -5.988  15.320  41.128  1.00  0.00              
ATOM     19  C   ARG     9      -4.794  16.187  41.500  1.00  0.00              
ATOM     20  O   ARG     9      -3.788  16.213  40.794  1.00  0.00              
ATOM     21  N   VAL    10      -4.903  16.873  42.629  1.00  0.00              
ATOM     22  CA  VAL    10      -3.839  17.739  43.130  1.00  0.00              
ATOM     23  C   VAL    10      -2.569  16.929  43.428  1.00  0.00              
ATOM     24  O   VAL    10      -1.457  17.371  43.132  1.00  0.00              
ATOM     25  N   THR    11      -2.736  15.734  43.990  1.00  0.00              
ATOM     26  CA  THR    11      -1.596  14.859  44.296  1.00  0.00              
ATOM     27  C   THR    11      -0.905  14.397  43.009  1.00  0.00              
ATOM     28  O   THR    11       0.314  14.273  42.967  1.00  0.00              
ATOM     29  N   ILE    12      -1.681  14.143  41.961  1.00  0.00              
ATOM     30  CA  ILE    12      -1.101  13.733  40.685  1.00  0.00              
ATOM     31  C   ILE    12      -0.303  14.892  40.094  1.00  0.00              
ATOM     32  O   ILE    12       0.793  14.693  39.587  1.00  0.00              
ATOM     33  N   LEU    13      -0.847  16.104  40.180  1.00  0.00              
ATOM     34  CA  LEU    13      -0.170  17.297  39.661  1.00  0.00              
ATOM     35  C   LEU    13       1.198  17.464  40.306  1.00  0.00              
ATOM     36  O   LEU    13       2.159  17.827  39.634  1.00  0.00              
ATOM     37  N   ASP    14       1.280  17.212  41.610  1.00  0.00              
ATOM     38  CA  ASP    14       2.554  17.304  42.321  1.00  0.00              
ATOM     39  C   ASP    14       3.536  16.338  41.668  1.00  0.00              
ATOM     40  O   ASP    14       4.686  16.687  41.420  1.00  0.00              
ATOM     41  N   GLY    15       3.069  15.121  41.399  1.00  0.00              
ATOM     42  CA  GLY    15       3.880  14.102  40.743  1.00  0.00              
ATOM     43  C   GLY    15       4.244  14.544  39.316  1.00  0.00              
ATOM     44  O   GLY    15       5.381  14.364  38.885  1.00  0.00              
ATOM     45  N   HIS    16       3.299  15.157  38.603  1.00  0.00              
ATOM     46  CA  HIS    16       3.555  15.639  37.242  1.00  0.00              
ATOM     47  C   HIS    16       4.617  16.735  37.243  1.00  0.00              
ATOM     48  O   HIS    16       5.519  16.737  36.403  1.00  0.00              
ATOM     49  N   LEU    17       4.522  17.650  38.203  1.00  0.00              
ATOM     50  CA  LEU    17       5.476  18.745  38.329  1.00  0.00              
ATOM     51  C   LEU    17       6.871  18.208  38.658  1.00  0.00              
ATOM     52  O   LEU    17       7.854  18.603  38.032  1.00  0.00              
ATOM     53  N   ARG    18       6.946  17.318  39.649  1.00  0.00              
ATOM     54  CA  ARG    18       8.211  16.718  40.080  1.00  0.00              
ATOM     55  C   ARG    18       8.907  15.971  38.949  1.00  0.00              
ATOM     56  O   ARG    18      10.132  16.038  38.803  1.00  0.00              
ATOM     57  N   ARG    19       8.119  15.261  38.149  1.00  0.00              
ATOM     58  CA  ARG    19       8.649  14.512  37.019  1.00  0.00              
ATOM     59  C   ARG    19       9.190  15.484  35.963  1.00  0.00              
ATOM     60  O   ARG    19      10.231  15.238  35.366  1.00  0.00              
ATOM     61  N   PHE    20       8.519  16.617  35.793  1.00  0.00              
ATOM     62  CA  PHE    20       8.950  17.616  34.827  1.00  0.00              
ATOM     63  C   PHE    20      10.244  18.266  35.270  1.00  0.00              
ATOM     64  O   PHE    20      11.102  18.567  34.443  1.00  0.00              
ATOM     65  N   GLN    21      10.366  18.521  36.569  1.00  0.00              
ATOM     66  CA  GLN    21      11.588  19.096  37.121  1.00  0.00              
ATOM     67  C   GLN    21      12.773  18.177  36.804  1.00  0.00              
ATOM     68  O   GLN    21      13.835  18.633  36.382  1.00  0.00              
ATOM     69  N   ASN    22      12.593  16.883  37.039  1.00  0.00              
ATOM     70  CA  ASN    22      13.636  15.902  36.775  1.00  0.00              
ATOM     71  C   ASN    22      13.966  15.823  35.287  1.00  0.00              
ATOM     72  O   ASN    22      15.127  15.720  34.915  1.00  0.00              
ATOM     73  N   ALA    23      12.950  15.857  34.433  1.00  0.00              
ATOM     74  CA  ALA    23      13.186  15.794  33.001  1.00  0.00              
ATOM     75  C   ALA    23      13.937  17.011  32.507  1.00  0.00              
ATOM     76  O   ALA    23      14.842  16.887  31.680  1.00  0.00              
ATOM     77  N   PHE    24      13.564  18.190  32.998  1.00  0.00              
ATOM     78  CA  PHE    24      14.254  19.409  32.593  1.00  0.00              
ATOM     79  C   PHE    24      15.693  19.412  33.109  1.00  0.00              
ATOM     80  O   PHE    24      16.583  19.918  32.430  1.00  0.00              
ATOM     81  N   SER    25      15.930  18.879  34.307  1.00  0.00              
ATOM     82  CA  SER    25      17.299  18.823  34.818  1.00  0.00              
ATOM     83  C   SER    25      18.135  17.924  33.893  1.00  0.00              
ATOM     84  O   SER    25      19.278  18.246  33.554  1.00  0.00              
ATOM     85  N   GLN    26      17.515  16.849  33.416  1.00  0.00              
ATOM     86  CA  GLN    26      18.164  15.902  32.509  1.00  0.00              
ATOM     87  C   GLN    26      18.529  16.574  31.188  1.00  0.00              
ATOM     88  O   GLN    26      19.618  16.371  30.657  1.00  0.00              
ATOM     89  N   TYR    27      17.593  17.342  30.638  1.00  0.00              
ATOM     90  CA  TYR    27      17.825  18.081  29.406  1.00  0.00              
ATOM     91  C   TYR    27      19.024  19.028  29.599  1.00  0.00              
ATOM     92  O   TYR    27      19.885  19.131  28.732  1.00  0.00              
ATOM     93  N   LYS    28      19.061  19.747  30.715  1.00  0.00              
ATOM     94  CA  LYS    28      20.167  20.656  30.968  1.00  0.00              
ATOM     95  C   LYS    28      21.491  19.910  31.033  1.00  0.00              
ATOM     96  O   LYS    28      22.482  20.385  30.488  1.00  0.00              
ATOM     97  N   LYS    29      21.510  18.761  31.709  1.00  0.00              
ATOM     98  CA  LYS    29      22.733  17.956  31.824  1.00  0.00              
ATOM     99  C   LYS    29      23.216  17.497  30.453  1.00  0.00              
ATOM    100  O   LYS    29      24.402  17.606  30.138  1.00  0.00              
ATOM    101  N   ALA    30      22.288  17.020  29.628  1.00  0.00              
ATOM    102  CA  ALA    30      22.612  16.555  28.285  1.00  0.00              
ATOM    103  C   ALA    30      23.109  17.706  27.429  1.00  0.00              
ATOM    104  O   ALA    30      24.073  17.550  26.676  1.00  0.00              
ATOM    105  N   VAL    31      22.477  18.872  27.555  1.00  0.00              
ATOM    106  CA  VAL    31      22.920  20.025  26.783  1.00  0.00              
ATOM    107  C   VAL    31      24.342  20.441  27.190  1.00  0.00              
ATOM    108  O   VAL    31      25.160  20.757  26.338  1.00  0.00              
ATOM    109  N   LEU    32      24.613  20.478  28.493  1.00  0.00              
ATOM    110  CA  LEU    32      25.940  20.839  29.001  1.00  0.00              
ATOM    111  C   LEU    32      26.980  19.868  28.426  1.00  0.00              
ATOM    112  O   LEU    32      28.015  20.294  27.904  1.00  0.00              
ATOM    113  N   PHE    33      26.665  18.571  28.491  1.00  0.00              
ATOM    114  CA  PHE    33      27.530  17.504  27.987  1.00  0.00              
ATOM    115  C   PHE    33      27.787  17.681  26.484  1.00  0.00              
ATOM    116  O   PHE    33      28.930  17.608  26.038  1.00  0.00              
ATOM    117  N   PRO    34      26.740  17.942  25.705  1.00  0.00              
ATOM    118  CA  PRO    34      26.927  18.130  24.270  1.00  0.00              
ATOM    119  C   PRO    34      27.736  19.404  23.993  1.00  0.00              
ATOM    120  O   PRO    34      28.355  19.528  22.940  1.00  0.00              
ATOM    121  N   ASP    35      27.690  20.359  24.925  1.00  0.00              
ATOM    122  CA  ASP    35      28.440  21.608  24.770  1.00  0.00              
ATOM    123  C   ASP    35      29.885  21.490  25.264  1.00  0.00              
ATOM    124  O   ASP    35      30.584  22.491  25.386  1.00  0.00              
ATOM    125  N   GLY    36      30.313  20.265  25.563  1.00  0.00              
ATOM    126  CA  GLY    36      31.678  20.030  26.008  1.00  0.00              
ATOM    127  C   GLY    36      32.015  20.138  27.483  1.00  0.00              
ATOM    128  O   GLY    36      33.187  20.072  27.839  1.00  0.00              
ATOM    129  N   GLN    37      31.019  20.257  28.355  1.00  0.00              
ATOM    130  CA  GLN    37      31.301  20.361  29.782  1.00  0.00              
ATOM    131  C   GLN    37      31.941  19.080  30.310  1.00  0.00              
ATOM    132  O   GLN    37      31.405  17.981  30.116  1.00  0.00              
ATOM    133  N   ALA    38      33.094  19.223  30.960  1.00  0.00              
ATOM    134  CA  ALA    38      33.813  18.089  31.527  1.00  0.00              
ATOM    135  C   ALA    38      33.350  17.919  32.950  1.00  0.00              
ATOM    136  O   ALA    38      32.959  18.890  33.608  1.00  0.00              
ATOM    137  N   VAL    39      33.409  16.682  33.424  1.00  0.00              
ATOM    138  CA  VAL    39      32.978  16.333  34.768  1.00  0.00              
ATOM    139  C   VAL    39      33.588  17.242  35.820  1.00  0.00              
ATOM    140  O   VAL    39      34.795  17.496  35.808  1.00  0.00              
ATOM    141  N   GLY    40      32.729  17.750  36.701  1.00  0.00              
ATOM    142  CA  GLY    40      33.159  18.616  37.782  1.00  0.00              
ATOM    143  C   GLY    40      33.924  19.865  37.386  1.00  0.00              
ATOM    144  O   GLY    40      34.596  20.477  38.224  1.00  0.00              
ATOM    145  N   GLU    41      33.840  20.257  36.122  1.00  0.00              
ATOM    146  CA  GLU    41      34.548  21.450  35.688  1.00  0.00              
ATOM    147  C   GLU    41      33.615  22.464  35.052  1.00  0.00              
ATOM    148  O   GLU    41      32.620  22.107  34.422  1.00  0.00              
END
