 
PFRMAT AL 
TARGET T0071 
AUTHOR 4139-4764-1095 
METHOD 1) Secondary structure was predicted with PHD and Predator. 
METHOD 2) The target was divided into the two domains given. 
METHOD 3) We used a hidden Markov model that predicts SCOP 
METHOD    classification based on sequence and secondary structure. 
METHOD 4) We also performed threading, using THREADER2 and taking secondary 
METHOD    structure into account. 
METHOD 5) The results from the two methods were similar - we are submitting 
METHOD    the HMM hits as model1 and the threader hits as model2. 
MODEL 1 
REMARK The parent-none fields below really just indicate 
REMARK that the corresponding residue(s) are not aligned 
PARENT NONE 87 93 
TER 
END 
