PFRMAT SS 
TARGET T0071 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t71.remote_2.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 5.93675 
METHOD 
MODEL 1 
S C 0.89 
E C 0.75 
D C 0.76 
N C 0.75 
F C 0.60 
A E 0.43 
R E 0.67 
F E 0.74 
V E 0.70 
C E 0.55 
K C 0.67 
N C 0.91 
N C 0.89 
G E 0.54 
V E 0.87 
L E 0.91 
F E 0.82 
E E 0.57 
N C 0.69 
Q C 0.62 
L E 0.59 
L E 0.81 
Q E 0.88 
I E 0.76 
G C 0.57 
L C 0.55 
K C 0.51 
S H 0.56 
E H 0.63 
F H 0.63 
R H 0.62 
Q C 0.49 
N C 0.68 
L C 0.76 
G C 0.86 
R C 0.63 
M E 0.70 
F E 0.88 
I E 0.93 
F E 0.91 
Y E 0.73 
G C 0.80 
N C 0.88 
K C 0.83 
T C 0.74 
S C 0.61 
T C 0.54 
Q C 0.41 
F C 0.40 
L C 0.57 
N C 0.61 
F C 0.73 
T C 0.86 
P C 0.70 
T C 0.46 
L E 0.49 
I E 0.50 
C C 0.60 
A C 0.78 
D C 0.69 
D H 0.47 
L H 0.55 
Q H 0.47 
T C 0.42 
N C 0.43 
L C 0.39 
N E 0.42 
L E 0.47 
Q E 0.48 
T C 0.44 
K C 0.60 
P C 0.64 
V C 0.66 
D C 0.76 
P C 0.77 
T C 0.64 
V C 0.55 
D C 0.65 
G C 0.78 
G C 0.79 
A C 0.52 
Q E 0.35 
V H 0.43 
Q H 0.45 
Q E 0.44 
V E 0.47 
I E 0.38 
N E 0.36 
I H 0.54 
E H 0.64 
C H 0.63 
I H 0.85 
S H 0.90 
D H 0.90 
F H 0.73 
T C 0.54 
E C 0.74 
A C 0.90 
P C 0.84 
V E 0.68 
L E 0.89 
N E 0.95 
I E 0.96 
Q E 0.95 
F E 0.92 
R E 0.84 
Y E 0.62 
G C 0.71 
G C 0.77 
T C 0.54 
F E 0.54 
Q E 0.57 
N E 0.64 
V E 0.64 
S E 0.62 
V E 0.70 
K E 0.71 
L E 0.59 
P C 0.51 
I E 0.48 
T E 0.48 
L H 0.39 
N H 0.66 
K H 0.70 
F H 0.49 
F C 0.64 
Q C 0.78 
P C 0.66 
T H 0.49 
E H 0.59 
M H 0.59 
A C 0.52 
S H 0.79 
Q H 0.93 
D H 0.95 
F H 0.95 
F H 0.96 
Q H 0.95 
R H 0.92 
W H 0.87 
K H 0.75 
Q H 0.59 
L C 0.53 
S C 0.75 
N C 0.69 
P C 0.48 
Q H 0.85 
Q H 0.94 
E H 0.95 
V H 0.96 
Q H 0.94 
N H 0.86 
I H 0.73 
F H 0.62 
K C 0.43 
A C 0.51 
K C 0.77 
H C 0.89 
P C 0.77 
M C 0.52 
D H 0.50 
T H 0.75 
E H 0.87 
I H 0.89 
T H 0.89 
K H 0.90 
A H 0.88 
K H 0.84 
I H 0.77 
I H 0.62 
G H 0.52 
F C 0.56 
G H 0.76 
S H 0.80 
A H 0.75 
L H 0.71 
L H 0.64 
E H 0.49 
E C 0.49 
V C 0.76 
D C 0.89 
P C 0.88 
N C 0.93 
P C 0.63 
A C 0.46 
N C 0.48 
F H 0.42 
V H 0.35 
G E 0.46 
A E 0.60 
G E 0.67 
I E 0.72 
I E 0.72 
H E 0.59 
T C 0.64 
K C 0.81 
T C 0.73 
T C 0.76 
Q C 0.65 
I E 0.58 
G E 0.74 
C E 0.84 
L E 0.87 
L E 0.79 
R E 0.66 
L E 0.51 
E C 0.65 
P C 0.79 
N C 0.82 
L H 0.56 
Q H 0.58 
A H 0.48 
Q E 0.40 
M E 0.62 
Y E 0.75 
R E 0.84 
L E 0.78 
T E 0.68 
L E 0.68 
R E 0.53 
T C 0.65 
S C 0.84 
K C 0.56 
D H 0.74 
T H 0.83 
V H 0.87 
S H 0.97 
Q H 0.99 
R H 0.98 
L H 0.99 
C H 0.99 
E H 0.99 
L H 0.97 
L H 0.92 
S H 0.77 
E H 0.65 
Q C 0.60 
F C 0.71 
END 
