PFRMAT SS 
TARGET T0073 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t73.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 12.8702 
METHOD 
MODEL 1 
S C 0.77 
L H 0.50 
A H 0.72 
A H 0.67 
L H 0.79 
K H 0.94 
S H 0.97 
E H 0.96 
L H 0.98 
Q H 0.98 
A H 0.98 
L H 0.93 
K H 0.80 
K H 0.56 
E C 0.64 
G C 0.76 
F C 0.84 
S C 0.79 
P H 0.76 
E H 0.92 
E H 0.93 
L H 0.98 
A H 0.99 
A H 0.98 
L H 0.98 
E H 0.99 
S H 0.98 
E H 0.97 
L H 0.98 
Q H 0.99 
A H 0.96 
L H 0.98 
E H 0.99 
K H 0.99 
K H 0.98 
L H 0.99 
A H 0.99 
A H 0.98 
L H 0.98 
K H 0.98 
S H 0.97 
K H 0.95 
L H 0.96 
Q H 0.94 
A H 0.92 
L H 0.84 
K H 0.56 
G C 0.75 
END 
