REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0074AL201_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : TATSUYA-AKUTSU 
REMARK  ---------------------------------------------------------- 
TARGET T0074  
AUTHOR 7648-2940-6918  
REMARK   
METHOD We align a target sequence with structurally aligned sequences  
METHOD (i.e., multiple structure alignment), where a multiple structure  
METHOD alignment is computed from results of pairwise structure alignments  
METHOD for similar structures.   
METHOD Pairwise structure alignments are computed using a computer  
METHOD program STRALIGN [1] developed by the group-leader and they are  
METHOD combined into a multiple structure alignment using a method like  
METHOD center-star alignment.  
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)  
METHOD is used for computing an alignment between a target sequence and  
METHOD the aligned sequences.  
METHOD Finally, an alignment between a target and one of the aligned  
METHOD sequences (i.e., template sequence) is extracted and refined.  
METHOD Human knowledge is also used to find template structures and  
METHOD to refine alignments.  
METHOD  
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming  
METHOD and iterative alignment, IEICE Transactions on Information and Systems,  
METHOD vol. E79-D, pp. 1629--1636, 1996.  
METHOD  
METHOD Program code of STRALIGN is available via  
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html  
MODEL  1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1cfc 
ATOM      1  N   ALA   130      13.368  13.834   0.419  1.00  0.00              
ATOM      2  CA  ALA   130      14.643  14.548   0.171  1.00  0.00              
ATOM      3  C   ALA   130      14.476  16.036   0.521  1.00  0.00              
ATOM      4  O   ALA   130      15.393  16.685   0.984  1.00  0.00              
ATOM      5  N   LYS   131      13.311  16.569   0.302  1.00  0.00              
ATOM      6  CA  LYS   131      13.064  18.006   0.615  1.00  0.00              
ATOM      7  C   LYS   131      13.069  18.211   2.131  1.00  0.00              
ATOM      8  O   LYS   131      13.241  19.308   2.621  1.00  0.00              
ATOM      9  N   TYR   132      12.876  17.160   2.875  1.00  0.00              
ATOM     10  CA  TYR   132      12.862  17.279   4.359  1.00  0.00              
ATOM     11  C   TYR   132      14.295  17.261   4.889  1.00  0.00              
ATOM     12  O   TYR   132      14.660  18.027   5.760  1.00  0.00              
ATOM     13  N   ASP   133      15.108  16.394   4.365  1.00  0.00              
ATOM     14  CA  ASP   133      16.524  16.320   4.829  1.00  0.00              
ATOM     15  C   ASP   133      17.297  17.527   4.285  1.00  0.00              
ATOM     16  O   ASP   133      18.093  18.126   4.981  1.00  0.00              
ATOM     17  N   ALA   134      17.081  17.887   3.050  1.00  0.00              
ATOM     18  CA  ALA   134      17.819  19.048   2.483  1.00  0.00              
ATOM     19  C   ALA   134      17.435  20.311   3.253  1.00  0.00              
ATOM     20  O   ALA   134      18.271  21.139   3.560  1.00  0.00              
ATOM     21  N   ILE   135      16.178  20.470   3.577  1.00  0.00              
ATOM     22  CA  ILE   135      15.769  21.685   4.333  1.00  0.00              
ATOM     23  C   ILE   135      16.370  21.622   5.737  1.00  0.00              
ATOM     24  O   ILE   135      16.563  22.634   6.379  1.00  0.00              
ATOM     25  N   PHE   136      16.710  20.451   6.210  1.00  0.00              
ATOM     26  CA  PHE   136      17.343  20.368   7.548  1.00  0.00              
ATOM     27  C   PHE   136      18.801  20.741   7.368  1.00  0.00              
ATOM     28  O   PHE   136      19.353  21.534   8.090  1.00  0.00              
ATOM     29  N   ASP   137      19.426  20.193   6.373  1.00  0.00              
ATOM     30  CA  ASP   137      20.838  20.550   6.134  1.00  0.00              
ATOM     31  C   ASP   137      20.889  22.061   5.900  1.00  0.00              
ATOM     32  O   ASP   137      21.888  22.706   6.149  1.00  0.00              
ATOM     33  N   SER   138      19.797  22.636   5.460  1.00  0.00              
ATOM     34  CA  SER   138      19.766  24.108   5.257  1.00  0.00              
ATOM     35  C   SER   138      19.858  24.770   6.631  1.00  0.00              
ATOM     36  O   SER   138      20.637  25.674   6.854  1.00  0.00              
ATOM     37  N   LEU   139      19.079  24.288   7.563  1.00  0.00              
ATOM     38  CA  LEU   139      19.121  24.841   8.950  1.00  0.00              
ATOM     39  C   LEU   139      20.571  24.795   9.432  1.00  0.00              
ATOM     40  O   LEU   139      20.951  25.452  10.381  1.00  0.00              
ATOM     41  N   SER   140      21.361  23.966   8.815  1.00  0.00              
ATOM     42  CA  SER   140      22.770  23.781   9.254  1.00  0.00              
ATOM     43  C   SER   140      23.747  24.574   8.384  1.00  0.00              
ATOM     44  O   SER   140      24.909  24.718   8.706  1.00  0.00              
ATOM     45  N   PRO   141      23.268  25.135   7.329  1.00  0.00              
ATOM     46  CA  PRO   141      24.133  25.977   6.444  1.00  0.00              
ATOM     47  C   PRO   141      24.060  27.427   6.942  1.00  0.00              
ATOM     48  O   PRO   141      23.500  28.291   6.298  1.00  0.00              
ATOM     49  N   VAL   142      24.603  27.682   8.103  1.00  0.00              
ATOM     50  CA  VAL   142      24.556  29.058   8.681  1.00  0.00              
ATOM     51  C   VAL   142      25.277  30.054   7.782  1.00  0.00              
ATOM     52  O   VAL   142      25.083  31.250   7.882  1.00  0.00              
ATOM     53  N   ASN   143      26.468  28.853   2.389  1.00  0.00              
ATOM     54  CA  ASN   143      27.524  28.500   1.388  1.00  0.00              
ATOM     55  C   ASN   143      27.274  27.106   0.790  1.00  0.00              
ATOM     56  O   ASN   143      27.834  26.766  -0.231  1.00  0.00              
ATOM     57  N   GLY   144      26.433  26.299   1.391  1.00  0.00              
ATOM     58  CA  GLY   144      26.163  24.944   0.823  1.00  0.00              
ATOM     59  C   GLY   144      27.139  23.922   1.405  1.00  0.00              
ATOM     60  O   GLY   144      27.185  22.786   0.978  1.00  0.00              
ATOM     61  N   PHE   145      27.926  24.320   2.365  1.00  0.00              
ATOM     62  CA  PHE   145      28.921  23.377   2.972  1.00  0.00              
ATOM     63  C   PHE   145      28.943  23.523   4.499  1.00  0.00              
ATOM     64  O   PHE   145      28.846  24.607   5.039  1.00  0.00              
ATOM     65  N   LEU   146      29.106  22.423   5.190  1.00  0.00              
ATOM     66  CA  LEU   146      29.181  22.451   6.688  1.00  0.00              
ATOM     67  C   LEU   146      30.255  21.453   7.129  1.00  0.00              
ATOM     68  O   LEU   146      30.683  20.614   6.362  1.00  0.00              
ATOM     69  N   SER   147      30.689  21.522   8.357  1.00  0.00              
ATOM     70  CA  SER   147      31.729  20.559   8.830  1.00  0.00              
ATOM     71  C   SER   147      31.091  19.176   9.026  1.00  0.00              
ATOM     72  O   SER   147      29.977  19.060   9.497  1.00  0.00              
ATOM     73  N   GLY   148      31.789  18.131   8.650  1.00  0.00              
ATOM     74  CA  GLY   148      31.236  16.746   8.792  1.00  0.00              
ATOM     75  C   GLY   148      30.503  16.589  10.126  1.00  0.00              
ATOM     76  O   GLY   148      29.530  15.873  10.225  1.00  0.00              
ATOM     77  N   ASP   149      30.961  17.240  11.153  1.00  0.00              
ATOM     78  CA  ASP   149      30.270  17.105  12.466  1.00  0.00              
ATOM     79  C   ASP   149      28.858  17.656  12.333  1.00  0.00              
ATOM     80  O   ASP   149      27.883  16.983  12.600  1.00  0.00              
ATOM     81  N   LYS   150      28.748  18.873  11.901  1.00  0.00              
ATOM     82  CA  LYS   150      27.406  19.485  11.721  1.00  0.00              
ATOM     83  C   LYS   150      26.590  18.615  10.755  1.00  0.00              
ATOM     84  O   LYS   150      25.376  18.621  10.773  1.00  0.00              
ATOM     85  N   VAL   151      27.254  17.865   9.918  1.00  0.00              
ATOM     86  CA  VAL   151      26.524  16.992   8.956  1.00  0.00              
ATOM     87  C   VAL   151      26.036  15.745   9.684  1.00  0.00              
ATOM     88  O   VAL   151      24.880  15.383   9.605  1.00  0.00              
ATOM     89  N   LYS   152      26.897  15.094  10.403  1.00  0.00              
ATOM     90  CA  LYS   152      26.473  13.891  11.138  1.00  0.00              
ATOM     91  C   LYS   152      25.411  14.334  12.147  1.00  0.00              
ATOM     92  O   LYS   152      24.490  13.609  12.462  1.00  0.00              
ATOM     93  N   PRO   153      25.536  15.536  12.638  1.00  0.00              
ATOM     94  CA  PRO   153      24.545  16.051  13.611  1.00  0.00              
ATOM     95  C   PRO   153      23.205  16.274  12.895  1.00  0.00              
ATOM     96  O   PRO   153      22.160  15.912  13.398  1.00  0.00              
ATOM     97  N   VAL   154      23.224  16.849  11.719  1.00  0.00              
ATOM     98  CA  VAL   154      21.946  17.066  10.979  1.00  0.00              
ATOM     99  C   VAL   154      21.211  15.731  10.890  1.00  0.00              
ATOM    100  O   VAL   154      19.999  15.665  10.944  1.00  0.00              
ATOM    101  N   LEU   155      21.951  14.668  10.697  1.00  0.00              
ATOM    102  CA  LEU   155      21.314  13.336  10.537  1.00  0.00              
ATOM    103  C   LEU   155      20.827  12.788  11.893  1.00  0.00              
ATOM    104  O   LEU   155      19.869  12.041  11.949  1.00  0.00              
ATOM    105  N   LEU   156      21.477  13.125  12.985  1.00  0.00              
ATOM    106  CA  LEU   156      21.051  12.596  14.308  1.00  0.00              
ATOM    107  C   LEU   156      19.936  13.474  14.907  1.00  0.00              
ATOM    108  O   LEU   156      18.965  12.973  15.438  1.00  0.00              
ATOM    109  N   ASN   157      20.073  14.772  14.843  1.00  0.00              
ATOM    110  CA  ASN   157      19.027  15.660  15.431  1.00  0.00              
ATOM    111  C   ASN   157      17.697  15.446  14.715  1.00  0.00              
ATOM    112  O   ASN   157      16.636  15.648  15.273  1.00  0.00              
ATOM    113  N   SER   158      16.310  10.422  12.978  1.00  0.00              
ATOM    114  CA  SER   158      16.240   9.277  12.028  1.00  0.00              
ATOM    115  C   SER   158      16.702   7.998  12.755  1.00  0.00              
ATOM    116  O   SER   158      17.499   8.059  13.670  1.00  0.00              
ATOM    117  N   LYS   159      16.215   6.838  12.364  1.00  0.00              
ATOM    118  CA  LYS   159      16.645   5.586  13.048  1.00  0.00              
ATOM    119  C   LYS   159      18.010   5.184  12.503  1.00  0.00              
ATOM    120  O   LYS   159      18.288   4.032  12.229  1.00  0.00              
ATOM    121  N   LEU   160      18.846   6.150  12.358  1.00  0.00              
ATOM    122  CA  LEU   160      20.228   5.911  11.837  1.00  0.00              
ATOM    123  C   LEU   160      21.125   5.424  12.978  1.00  0.00              
ATOM    124  O   LEU   160      21.037   5.881  14.100  1.00  0.00              
ATOM    125  N   PRO   161      22.020   4.517  12.671  1.00  0.00              
ATOM    126  CA  PRO   161      22.981   4.000  13.689  1.00  0.00              
ATOM    127  C   PRO   161      24.358   4.600  13.390  1.00  0.00              
ATOM    128  O   PRO   161      24.707   4.832  12.248  1.00  0.00              
ATOM    129  N   VAL   162      25.138   4.868  14.394  1.00  0.00              
ATOM    130  CA  VAL   162      26.483   5.472  14.156  1.00  0.00              
ATOM    131  C   VAL   162      27.291   4.605  13.184  1.00  0.00              
ATOM    132  O   VAL   162      28.171   5.086  12.502  1.00  0.00              
ATOM    133  N   ASP   163      27.011   3.333  13.121  1.00  0.00              
ATOM    134  CA  ASP   163      27.782   2.452  12.196  1.00  0.00              
ATOM    135  C   ASP   163      27.368   2.723  10.748  1.00  0.00              
ATOM    136  O   ASP   163      28.191   2.751   9.855  1.00  0.00              
ATOM    137  N   ILE   164      26.101   2.910  10.502  1.00  0.00              
ATOM    138  CA  ILE   164      25.651   3.166   9.104  1.00  0.00              
ATOM    139  C   ILE   164      26.282   4.457   8.582  1.00  0.00              
ATOM    140  O   ILE   164      26.734   4.523   7.456  1.00  0.00              
ATOM    141  N   LEU   165      26.321   5.483   9.385  1.00  0.00              
ATOM    142  CA  LEU   165      26.924   6.764   8.920  1.00  0.00              
ATOM    143  C   LEU   165      28.414   6.537   8.650  1.00  0.00              
ATOM    144  O   LEU   165      28.968   7.049   7.696  1.00  0.00              
ATOM    145  N   GLY   166      29.059   5.771   9.474  1.00  0.00              
ATOM    146  CA  GLY   166      30.508   5.507   9.258  1.00  0.00              
ATOM    147  C   GLY   166      30.706   4.912   7.861  1.00  0.00              
ATOM    148  O   GLY   166      31.713   5.134   7.220  1.00  0.00              
ATOM    149  N   ARG   167      29.745   4.170   7.378  1.00  0.00              
ATOM    150  CA  ARG   167      29.876   3.581   6.016  1.00  0.00              
ATOM    151  C   ARG   167      29.617   4.688   4.989  1.00  0.00              
ATOM    152  O   ARG   167      30.292   4.792   3.984  1.00  0.00              
ATOM    153  N   VAL   168      28.648   5.519   5.247  1.00  0.00              
ATOM    154  CA  VAL   168      28.334   6.635   4.314  1.00  0.00              
ATOM    155  C   VAL   168      29.491   7.646   4.315  1.00  0.00              
ATOM    156  O   VAL   168      29.702   8.362   3.356  1.00  0.00              
ATOM    157  N   TRP   169      30.255   7.694   5.376  1.00  0.00              
ATOM    158  CA  TRP   169      31.419   8.637   5.440  1.00  0.00              
ATOM    159  C   TRP   169      32.602   8.059   4.642  1.00  0.00              
ATOM    160  O   TRP   169      33.425   8.790   4.126  1.00  0.00              
ATOM    161  N   GLU   170      32.704   6.759   4.543  1.00  0.00              
ATOM    162  CA  GLU   170      33.842   6.151   3.789  1.00  0.00              
ATOM    163  C   GLU   170      33.791   6.582   2.315  1.00  0.00              
ATOM    164  O   GLU   170      34.775   7.036   1.767  1.00  0.00              
ATOM    165  N   LEU   171      32.671   6.424   1.657  1.00  0.00              
ATOM    166  CA  LEU   171      32.606   6.813   0.212  1.00  0.00              
ATOM    167  C   LEU   171      32.435   8.336   0.069  1.00  0.00              
ATOM    168  O   LEU   171      32.728   8.900  -0.966  1.00  0.00              
ATOM    169  N   SER   172      32.015   9.017   1.105  1.00  0.00              
ATOM    170  CA  SER   172      31.889  10.489   1.033  1.00  0.00              
ATOM    171  C   SER   172      33.212  11.052   1.489  1.00  0.00              
ATOM    172  O   SER   172      33.346  11.443   2.622  1.00  0.00              
ATOM    173  N   ASP   173      34.177  11.050   0.626  1.00  0.00              
ATOM    174  CA  ASP   173      35.547  11.551   0.974  1.00  0.00              
ATOM    175  C   ASP   173      35.422  12.789   1.864  1.00  0.00              
ATOM    176  O   ASP   173      35.455  13.919   1.419  1.00  0.00              
ATOM    177  N   ILE   174      35.205  12.541   3.121  1.00  0.00              
ATOM    178  CA  ILE   174      34.985  13.627   4.111  1.00  0.00              
ATOM    179  C   ILE   174      36.308  14.238   4.571  1.00  0.00              
ATOM    180  O   ILE   174      36.357  15.134   5.391  1.00  0.00              
ATOM    181  N   ASP   175      37.348  13.778   4.014  1.00  0.00              
ATOM    182  CA  ASP   175      38.702  14.276   4.326  1.00  0.00              
ATOM    183  C   ASP   175      39.217  14.948   3.071  1.00  0.00              
ATOM    184  O   ASP   175      38.453  15.410   2.245  1.00  0.00              
ATOM    185  N   HIS   176      40.486  15.025   2.920  1.00  0.00              
ATOM    186  CA  HIS   176      41.042  15.693   1.720  1.00  0.00              
ATOM    187  C   HIS   176      40.752  17.194   1.809  1.00  0.00              
ATOM    188  O   HIS   176      41.468  18.005   1.258  1.00  0.00              
ATOM    189  N   ASP   177      39.701  17.569   2.509  1.00  0.00              
ATOM    190  CA  ASP   177      39.351  19.020   2.645  1.00  0.00              
ATOM    191  C   ASP   177      39.054  19.333   4.113  1.00  0.00              
ATOM    192  O   ASP   177      39.900  19.805   4.845  1.00  0.00              
ATOM    193  N   GLY   178      37.851  19.075   4.543  1.00  0.00              
ATOM    194  CA  GLY   178      37.476  19.356   5.962  1.00  0.00              
ATOM    195  C   GLY   178      35.974  19.623   6.043  1.00  0.00              
ATOM    196  O   GLY   178      35.338  19.372   7.049  1.00  0.00              
ATOM    197  N   MET   179      35.403  20.125   4.979  1.00  0.00              
ATOM    198  CA  MET   179      33.936  20.417   4.945  1.00  0.00              
ATOM    199  C   MET   179      33.326  19.666   3.758  1.00  0.00              
ATOM    200  O   MET   179      33.997  19.407   2.777  1.00  0.00              
ATOM    201  N   LEU   180      32.074  19.287   3.842  1.00  0.00              
ATOM    202  CA  LEU   180      31.444  18.524   2.726  1.00  0.00              
ATOM    203  C   LEU   180      30.021  19.039   2.502  1.00  0.00              
ATOM    204  O   LEU   180      29.348  19.456   3.425  1.00  0.00              
ATOM    205  N   ASP   181      29.539  18.971   1.296  1.00  0.00              
ATOM    206  CA  ASP   181      28.141  19.407   1.037  1.00  0.00              
ATOM    207  C   ASP   181      27.233  18.259   1.471  1.00  0.00              
ATOM    208  O   ASP   181      27.699  17.182   1.791  1.00  0.00              
ATOM    209  N   ARG   182      25.954  18.487   1.522  1.00  0.00              
ATOM    210  CA  ARG   182      25.009  17.415   1.984  1.00  0.00              
ATOM    211  C   ARG   182      24.267  16.747   0.804  1.00  0.00              
ATOM    212  O   ARG   182      23.901  15.597   0.904  1.00  0.00              
ATOM    213  N   ASP   183      24.022  17.439  -0.291  1.00  0.00              
ATOM    214  CA  ASP   183      23.282  16.816  -1.433  1.00  0.00              
ATOM    215  C   ASP   183      23.723  15.360  -1.642  1.00  0.00              
ATOM    216  O   ASP   183      22.916  14.497  -1.923  1.00  0.00              
ATOM    217  N   GLU   184      24.985  15.077  -1.499  1.00  0.00              
ATOM    218  CA  GLU   184      25.448  13.672  -1.680  1.00  0.00              
ATOM    219  C   GLU   184      24.989  12.835  -0.485  1.00  0.00              
ATOM    220  O   GLU   184      24.519  11.721  -0.630  1.00  0.00              
ATOM    221  N   PHE   185      25.130  13.362   0.699  1.00  0.00              
ATOM    222  CA  PHE   185      24.712  12.606   1.918  1.00  0.00              
ATOM    223  C   PHE   185      23.177  12.545   1.993  1.00  0.00              
ATOM    224  O   PHE   185      22.618  11.675   2.631  1.00  0.00              
ATOM    225  N   ALA   186      22.486  13.452   1.352  1.00  0.00              
ATOM    226  CA  ALA   186      20.999  13.415   1.407  1.00  0.00              
ATOM    227  C   ALA   186      20.503  12.208   0.610  1.00  0.00              
ATOM    228  O   ALA   186      19.695  11.428   1.074  1.00  0.00              
ATOM    229  N   VAL   187      20.987  12.057  -0.594  1.00  0.00              
ATOM    230  CA  VAL   187      20.557  10.913  -1.446  1.00  0.00              
ATOM    231  C   VAL   187      20.948   9.592  -0.779  1.00  0.00              
ATOM    232  O   VAL   187      20.323   8.572  -0.989  1.00  0.00              
ATOM    233  N   ALA   188      21.984   9.600   0.015  1.00  0.00              
ATOM    234  CA  ALA   188      22.418   8.338   0.683  1.00  0.00              
ATOM    235  C   ALA   188      21.443   7.980   1.812  1.00  0.00              
ATOM    236  O   ALA   188      21.106   6.829   2.006  1.00  0.00              
END
