REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0074AL212_3 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0074  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK Prepared by Anna Panchenko, Aron Marchler-Bauer, and Steve Bryant, NCBI   
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in   
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins   
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading   
METHOD potentials, PSSMs summarizing sequence conservation in the family   
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure   
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine (and with alignment constraints derived from sequence comparison,  
METHOD based on manually generated alignments, if PSSMs were not used to  
METHOD score alignments, models 3 and 4). The templates were  
METHOD identified by a sequence database search using BLAST, and in threading   
METHOD database-searches using PSSMs. Models 1 and 2 have been calculated  
METHOD with a weight of 1.0 for the PSSM-based scoring function, models 3  
METHOD and 4 with the contact-based threading potential and alignment   
METHOD constraints, model 5 represents the top hit from the automated  
METHOD threading database search.  
REMARK =======================================================================  
MODEL  3  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1trc_A 
ATOM      1  N   ALA   130      43.968   3.892  95.537  1.00  0.00              
ATOM      2  CA  ALA   130      42.547   3.507  95.694  1.00  0.00              
ATOM      3  C   ALA   130      42.282   3.493  97.203  1.00  0.00              
ATOM      4  O   ALA   130      43.056   2.908  97.955  1.00  0.00              
ATOM      5  N   LYS   131      41.278   4.195  97.592  1.00  0.00              
ATOM      6  CA  LYS   131      40.900   4.387  99.001  1.00  0.00              
ATOM      7  C   LYS   131      42.009   4.526  99.994  1.00  0.00              
ATOM      8  O   LYS   131      42.962   5.371  99.774  1.00  0.00              
ATOM      9  N   TYR   132      42.121   3.840 101.143  1.00  0.00              
ATOM     10  CA  TYR   132      43.089   3.774 102.174  1.00  0.00              
ATOM     11  C   TYR   132      44.518   3.494 101.731  1.00  0.00              
ATOM     12  O   TYR   132      45.535   3.621 102.405  1.00  0.00              
ATOM     13  N   ASP   133      44.617   3.341 100.443  1.00  0.00              
ATOM     14  CA  ASP   133      45.741   3.316  99.575  1.00  0.00              
ATOM     15  C   ASP   133      46.067   4.641  98.890  1.00  0.00              
ATOM     16  O   ASP   133      47.365   4.748  98.799  1.00  0.00              
ATOM     17  N   ALA   134      45.223   5.630  98.525  1.00  0.00              
ATOM     18  CA  ALA   134      45.755   6.865  97.850  1.00  0.00              
ATOM     19  C   ALA   134      46.371   7.774  98.941  1.00  0.00              
ATOM     20  O   ALA   134      47.501   8.265  98.841  1.00  0.00              
ATOM     21  N   ILE   135      45.576   8.086  99.884  1.00  0.00              
ATOM     22  CA  ILE   135      45.658   8.846 101.107  1.00  0.00              
ATOM     23  C   ILE   135      47.048   8.937 101.691  1.00  0.00              
ATOM     24  O   ILE   135      47.649   9.988 101.625  1.00  0.00              
ATOM     25  N   PHE   136      47.521   7.860 102.260  1.00  0.00              
ATOM     26  CA  PHE   136      48.738   7.481 102.831  1.00  0.00              
ATOM     27  C   PHE   136      49.994   7.489 102.040  1.00  0.00              
ATOM     28  O   PHE   136      50.732   8.285 102.689  1.00  0.00              
ATOM     29  N   ASP   137      50.459   7.002 100.835  1.00  0.00              
ATOM     30  CA  ASP   137      51.779   7.412 100.321  1.00  0.00              
ATOM     31  C   ASP   137      51.802   8.962 100.204  1.00  0.00              
ATOM     32  O   ASP   137      52.873   9.552 100.514  1.00  0.00              
ATOM     33  N   SER   138      50.708   9.615  99.881  1.00  0.00              
ATOM     34  CA  SER   138      50.562  11.058  99.884  1.00  0.00              
ATOM     35  C   SER   138      50.202  11.602 101.260  1.00  0.00              
ATOM     36  O   SER   138      50.102  12.819 101.334  1.00  0.00              
ATOM     37  N   LEU   139      50.041  10.810 102.267  1.00  0.00              
ATOM     38  CA  LEU   139      49.830  11.113 103.679  1.00  0.00              
ATOM     39  C   LEU   139      51.109  10.773 104.511  1.00  0.00              
ATOM     40  O   LEU   139      51.395  11.196 105.681  1.00  0.00              
ATOM     41  N   SER   140      51.941  10.015 103.778  1.00  0.00              
ATOM     42  CA  SER   140      53.245   9.512 104.145  1.00  0.00              
ATOM     43  C   SER   140      54.237  10.674 104.017  1.00  0.00              
ATOM     44  O   SER   140      55.422  10.573 104.406  1.00  0.00              
ATOM     45  N   PRO   141      53.714  11.803 103.488  1.00  0.00              
ATOM     46  CA  PRO   141      54.437  13.069 103.230  1.00  0.00              
ATOM     47  C   PRO   141      53.701  14.324 103.572  1.00  0.00              
ATOM     48  O   PRO   141      54.011  15.444 103.210  1.00  0.00              
ATOM     49  N   VAL   142      52.663  14.252 104.357  1.00  0.00              
ATOM     50  CA  VAL   142      51.689  15.121 105.018  1.00  0.00              
ATOM     51  C   VAL   142      52.444  15.751 106.207  1.00  0.00              
ATOM     52  O   VAL   142      52.680  16.860 106.637  1.00  0.00              
ATOM     53  N   GLY   144      55.585  12.372 111.144  1.00  0.00              
ATOM     54  CA  GLY   144      54.267  11.863 111.203  1.00  0.00              
ATOM     55  C   GLY   144      53.115  12.767 111.557  1.00  0.00              
ATOM     56  O   GLY   144      52.245  12.389 112.378  1.00  0.00              
ATOM     57  N   PHE   145      53.093  13.958 110.932  1.00  0.00              
ATOM     58  CA  PHE   145      52.145  15.026 110.996  1.00  0.00              
ATOM     59  C   PHE   145      52.717  16.305 110.443  1.00  0.00              
ATOM     60  O   PHE   145      53.843  16.409 109.956  1.00  0.00              
ATOM     61  N   LEU   146      51.952  17.368 110.469  1.00  0.00              
ATOM     62  CA  LEU   146      51.852  18.789 109.993  1.00  0.00              
ATOM     63  C   LEU   146      51.665  19.891 111.035  1.00  0.00              
ATOM     64  O   LEU   146      52.214  19.585 112.202  1.00  0.00              
ATOM     65  N   SER   147      51.219  21.134 110.967  1.00  0.00              
ATOM     66  CA  SER   147      51.153  22.157 111.964  1.00  0.00              
ATOM     67  C   SER   147      51.443  23.519 111.360  1.00  0.00              
ATOM     68  O   SER   147      50.782  23.750 110.366  1.00  0.00              
ATOM     69  N   GLY   148      52.295  24.369 111.844  1.00  0.00              
ATOM     70  CA  GLY   148      52.679  25.675 111.325  1.00  0.00              
ATOM     71  C   GLY   148      53.674  25.760 110.195  1.00  0.00              
ATOM     72  O   GLY   148      53.174  25.449 109.103  1.00  0.00              
ATOM     73  N   ASP   149      54.947  26.051 110.176  1.00  0.00              
ATOM     74  CA  ASP   149      55.978  26.045 109.196  1.00  0.00              
ATOM     75  C   ASP   149      56.157  24.809 108.353  1.00  0.00              
ATOM     76  O   ASP   149      56.983  24.687 107.478  1.00  0.00              
ATOM     77  N   LYS   150      55.420  23.837 108.661  1.00  0.00              
ATOM     78  CA  LYS   150      55.170  22.490 108.364  1.00  0.00              
ATOM     79  C   LYS   150      53.802  22.288 107.772  1.00  0.00              
ATOM     80  O   LYS   150      53.622  21.362 106.938  1.00  0.00              
ATOM     81  N   VAL   151      52.806  23.104 108.107  1.00  0.00              
ATOM     82  CA  VAL   151      51.603  23.139 107.257  1.00  0.00              
ATOM     83  C   VAL   151      51.923  24.429 106.399  1.00  0.00              
ATOM     84  O   VAL   151      51.313  24.500 105.381  1.00  0.00              
ATOM     85  N   LYS   152      52.930  25.226 106.705  1.00  0.00              
ATOM     86  CA  LYS   152      53.332  26.473 106.187  1.00  0.00              
ATOM     87  C   LYS   152      54.084  26.437 104.880  1.00  0.00              
ATOM     88  O   LYS   152      53.714  27.369 104.103  1.00  0.00              
ATOM     89  N   PRO   153      54.993  25.499 104.694  1.00  0.00              
ATOM     90  CA  PRO   153      55.642  25.387 103.370  1.00  0.00              
ATOM     91  C   PRO   153      54.765  24.617 102.381  1.00  0.00              
ATOM     92  O   PRO   153      54.852  24.713 101.112  1.00  0.00              
ATOM     93  N   VAL   154      53.863  23.880 102.992  1.00  0.00              
ATOM     94  CA  VAL   154      52.862  22.932 102.407  1.00  0.00              
ATOM     95  C   VAL   154      51.489  23.499 102.072  1.00  0.00              
ATOM     96  O   VAL   154      50.743  23.115 101.119  1.00  0.00              
ATOM     97  N   LEU   155      51.076  24.481 102.862  1.00  0.00              
ATOM     98  CA  LEU   155      49.880  25.283 102.701  1.00  0.00              
ATOM     99  C   LEU   155      50.325  26.322 101.698  1.00  0.00              
ATOM    100  O   LEU   155      49.788  26.293 100.550  1.00  0.00              
ATOM    101  N   LEU   156      51.434  27.014 101.934  1.00  0.00              
ATOM    102  CA  LEU   156      51.976  27.974 100.967  1.00  0.00              
ATOM    103  C   LEU   156      51.938  27.430  99.511  1.00  0.00              
ATOM    104  O   LEU   156      51.796  28.214  98.573  1.00  0.00              
ATOM    105  N   LEU   160      49.986  32.291 103.361  1.00  0.00              
ATOM    106  CA  LEU   160      50.251  32.389 104.719  1.00  0.00              
ATOM    107  C   LEU   160      49.274  33.309 105.440  1.00  0.00              
ATOM    108  O   LEU   160      48.965  34.463 105.163  1.00  0.00              
ATOM    109  N   PRO   161      48.854  32.721 106.484  1.00  0.00              
ATOM    110  CA  PRO   161      47.909  33.374 107.454  1.00  0.00              
ATOM    111  C   PRO   161      48.629  33.398 108.833  1.00  0.00              
ATOM    112  O   PRO   161      48.959  34.268 109.657  1.00  0.00              
ATOM    113  N   VAL   162      48.947  32.182 109.157  1.00  0.00              
ATOM    114  CA  VAL   162      49.441  31.136 109.898  1.00  0.00              
ATOM    115  C   VAL   162      48.463  30.586 110.956  1.00  0.00              
ATOM    116  O   VAL   162      48.247  29.442 111.379  1.00  0.00              
ATOM    117  N   ASP   163      47.771  31.620 111.410  1.00  0.00              
ATOM    118  CA  ASP   163      46.750  31.588 112.408  1.00  0.00              
ATOM    119  C   ASP   163      45.598  30.741 111.860  1.00  0.00              
ATOM    120  O   ASP   163      44.885  30.127 112.664  1.00  0.00              
ATOM    121  N   ILE   164      45.431  30.813 110.552  1.00  0.00              
ATOM    122  CA  ILE   164      44.415  30.015 109.910  1.00  0.00              
ATOM    123  C   ILE   164      45.039  28.632 109.820  1.00  0.00              
ATOM    124  O   ILE   164      44.238  27.686 109.860  1.00  0.00              
ATOM    125  N   LEU   165      46.369  28.477 109.792  1.00  0.00              
ATOM    126  CA  LEU   165      47.064  27.151 109.675  1.00  0.00              
ATOM    127  C   LEU   165      46.799  26.312 110.972  1.00  0.00              
ATOM    128  O   LEU   165      47.001  25.141 111.143  1.00  0.00              
ATOM    129  N   GLY   166      46.617  27.143 111.885  1.00  0.00              
ATOM    130  CA  GLY   166      46.219  26.983 113.275  1.00  0.00              
ATOM    131  C   GLY   166      44.725  26.626 113.273  1.00  0.00              
ATOM    132  O   GLY   166      44.324  25.927 114.273  1.00  0.00              
ATOM    133  N   ARG   167      43.909  26.982 112.223  1.00  0.00              
ATOM    134  CA  ARG   167      42.453  26.759 112.269  1.00  0.00              
ATOM    135  C   ARG   167      41.714  25.813 111.419  1.00  0.00              
ATOM    136  O   ARG   167      40.491  25.575 111.511  1.00  0.00              
ATOM    137  N   VAL   168      42.320  25.095 110.586  1.00  0.00              
ATOM    138  CA  VAL   168      42.031  23.984 109.681  1.00  0.00              
ATOM    139  C   VAL   168      42.634  22.720 110.349  1.00  0.00              
ATOM    140  O   VAL   168      42.597  21.575 109.902  1.00  0.00              
ATOM    141  N   TRP   169      43.288  22.914 111.434  1.00  0.00              
ATOM    142  CA  TRP   169      44.085  22.049 112.277  1.00  0.00              
ATOM    143  C   TRP   169      43.406  21.767 113.587  1.00  0.00              
ATOM    144  O   TRP   169      42.974  20.641 113.890  1.00  0.00              
ATOM    145  N   GLU   170      43.200  22.749 114.412  1.00  0.00              
ATOM    146  CA  GLU   170      42.565  22.901 115.691  1.00  0.00              
ATOM    147  C   GLU   170      41.383  21.936 115.764  1.00  0.00              
ATOM    148  O   GLU   170      41.251  21.304 116.797  1.00  0.00              
ATOM    149  N   LEU   171      40.639  21.815 114.680  1.00  0.00              
ATOM    150  CA  LEU   171      39.433  21.210 114.213  1.00  0.00              
ATOM    151  C   LEU   171      39.555  19.823 113.575  1.00  0.00              
ATOM    152  O   LEU   171      38.679  19.195 112.941  1.00  0.00              
ATOM    153  N   MET   179      50.046  17.510 117.195  1.00  0.00              
ATOM    154  CA  MET   179      50.475  16.184 116.960  1.00  0.00              
ATOM    155  C   MET   179      49.433  15.277 116.311  1.00  0.00              
ATOM    156  O   MET   179      49.499  14.028 116.328  1.00  0.00              
ATOM    157  N   LEU   180      48.480  15.892 115.639  1.00  0.00              
ATOM    158  CA  LEU   180      47.388  15.294 114.898  1.00  0.00              
ATOM    159  C   LEU   180      47.684  14.139 113.967  1.00  0.00              
ATOM    160  O   LEU   180      47.883  14.131 112.780  1.00  0.00              
ATOM    161  N   ASP   181      47.540  12.977 114.480  1.00  0.00              
ATOM    162  CA  ASP   181      47.644  11.642 114.000  1.00  0.00              
ATOM    163  C   ASP   181      46.942  11.332 112.661  1.00  0.00              
ATOM    164  O   ASP   181      46.413  12.051 111.846  1.00  0.00              
ATOM    165  N   ARG   182      47.004  10.045 112.374  1.00  0.00              
ATOM    166  CA  ARG   182      46.526   9.125 111.408  1.00  0.00              
ATOM    167  C   ARG   182      45.004   9.352 111.370  1.00  0.00              
ATOM    168  O   ARG   182      44.620  10.328 110.766  1.00  0.00              
ATOM    169  N   ASP   183      44.258   8.568 112.166  1.00  0.00              
ATOM    170  CA  ASP   183      42.822   8.634 112.220  1.00  0.00              
ATOM    171  C   ASP   183      42.354  10.070 112.193  1.00  0.00              
ATOM    172  O   ASP   183      41.475  10.440 111.430  1.00  0.00              
ATOM    173  N   GLU   184      43.073  10.946 112.867  1.00  0.00              
ATOM    174  CA  GLU   184      42.849  12.331 112.985  1.00  0.00              
ATOM    175  C   GLU   184      42.590  12.924 111.609  1.00  0.00              
ATOM    176  O   GLU   184      41.675  13.716 111.468  1.00  0.00              
ATOM    177  N   PHE   185      43.456  12.515 110.720  1.00  0.00              
ATOM    178  CA  PHE   185      43.378  12.851 109.257  1.00  0.00              
ATOM    179  C   PHE   185      43.005  11.461 108.673  1.00  0.00              
ATOM    180  O   PHE   185      43.850  10.926 107.957  1.00  0.00              
ATOM    181  N   ALA   186      41.888  10.917 108.949  1.00  0.00              
ATOM    182  CA  ALA   186      41.393   9.698 108.371  1.00  0.00              
ATOM    183  C   ALA   186      40.156  10.120 107.568  1.00  0.00              
ATOM    184  O   ALA   186      39.840   9.586 106.518  1.00  0.00              
ATOM    185  N   VAL   187      39.491  11.090 108.099  1.00  0.00              
ATOM    186  CA  VAL   187      38.223  11.601 107.566  1.00  0.00              
ATOM    187  C   VAL   187      38.227  13.017 107.044  1.00  0.00              
ATOM    188  O   VAL   187      37.161  13.505 106.581  1.00  0.00              
ATOM    189  N   ALA   188      39.358  13.480 106.547  1.00  0.00              
ATOM    190  CA  ALA   188      39.648  14.806 106.042  1.00  0.00              
ATOM    191  C   ALA   188      39.719  15.052 104.613  1.00  0.00              
ATOM    192  O   ALA   188      39.231  16.201 104.187  1.00  0.00              
ATOM    193  N   MET   189      40.313  14.367 103.782  1.00  0.00              
ATOM    194  CA  MET   189      40.284  14.371 102.222  1.00  0.00              
ATOM    195  C   MET   189      39.226  13.253 102.133  1.00  0.00              
ATOM    196  O   MET   189      37.978  13.382 102.245  1.00  0.00              
ATOM    197  N   PHE   190      39.626  12.009 102.332  1.00  0.00              
ATOM    198  CA  PHE   190      39.162  10.743 102.808  1.00  0.00              
ATOM    199  C   PHE   190      39.413  11.564 104.384  1.00  0.00              
ATOM    200  O   PHE   190      38.415  11.896 104.657  1.00  0.00              
ATOM    201  N   LEU   191      40.599  11.689 104.678  1.00  0.00              
ATOM    202  CA  LEU   191      41.865  12.045 104.814  1.00  0.00              
ATOM    203  C   LEU   191      43.092  11.489 104.071  1.00  0.00              
ATOM    204  O   LEU   191      43.317  11.561 102.832  1.00  0.00              
END
