PFRMAT SS 
TARGET T0075 
AUTHOR 9271-4485-8460 
REMARK 
METHOD  Automated I-SITES + ROSETTA 
METHOD 
METHOD (1) Psi-blast was used to obtain an alignment 
METHOD (2) The I-sites method (JMB 281(3):565-577) 
METHOD     was used to predict backbone angles and 
METHOD     confidences. Backbone angle confidnces are reflected in 
METHOD     the B-column of the PDB output. B = 1.00 + (1.00 - confidence)*10 
METHOD     except unpredicted residus (B = 0.00) 
METHOD (3) 3-state assignments were derived from the paradigm fragment 
METHOD     of the sequence-structure motif predicted at and around 
METHOD     the position in question. 
METHOD 
METHOD >>>>THIS METHOD IS TOTALLY AUTOMATED!! <<<< 
METHOD In constrast to earlier CASP3 
METHOD methods from this (D. Baker) lab. The submissions from this 
METHOD group ("C.Bystroff") are made automatically with no manual 
METHOD intervention. The method will be available via WWW server, 
METHOD after CASP3. The URL is http://ganesh.bchem.washington.edu/ 
METHOD ~bystroff/Isites/ISLserver2.html 
METHOD 
METHOD This SS prediction corresponds to the TS prediction for Model 2 
MODEL 2 
M E 0.22 
E E 0.45 
C E 0.39 
A C 0.43 
D C 0.55 
V E 0.58 
P E 0.60 
L C 0.58 
L E 0.60 
T E 0.68 
P E 0.55 
S E 0.38 
S C 0.41 
K H 0.60 
E H 0.68 
M H 0.68 
M H 0.68 
S H 0.68 
Q H 0.68 
A H 0.67 
L H 0.67 
K H 0.65 
A H 0.63 
T H 0.63 
F H 0.63 
S H 0.63 
G H 0.69 
F H 0.76 
T H 0.66 
K H 0.62 
E H 0.50 
Q H 0.33 
Q H 0.31 
R H 0.29 
L E 0.30 
G E 0.38 
I E 0.44 
P E 0.39 
K C 0.44 
D C 0.48 
P H 0.48 
R H 0.48 
Q H 0.44 
W H 0.40 
T H 0.54 
E H 0.59 
T H 0.57 
H H 0.55 
V H 0.55 
R H 0.55 
D H 0.55 
W H 0.55 
V H 0.55 
M H 0.55 
W H 0.55 
A H 0.55 
V H 0.55 
N H 0.55 
E H 0.48 
F C 0.58 
S C 0.57 
L E 0.52 
K C 0.42 
G E 0.27 
V C 0.54 
D E 0.51 
F E 0.44 
Q E 0.34 
K H 0.23 
F E 0.47 
C H 0.47 
M C 0.47 
S E 0.25 
G H 0.51 
A H 0.47 
A H 0.57 
L H 0.62 
C H 0.67 
A H 0.60 
L H 0.50 
G H 0.46 
K H 0.42 
E H 0.47 
C H 0.57 
F H 0.51 
L H 0.44 
E H 0.38 
L C 0.20 
A E 0.40 
P C 0.20 
D E 0.16 
F E 0.41 
V H 0.51 
G H 0.51 
D H 0.61 
I H 0.62 
L H 0.64 
W H 0.67 
E H 0.72 
H H 0.77 
L H 0.78 
E H 0.77 
I H 0.77 
L H 0.77 
Q H 0.72 
K H 0.67 
E H 0.55 
D C 0.47 
V C 0.23 
K C 0.00 
END 
