PFRMAT SS 
TARGET T0076 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t76.t98_1.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 4.21664 
METHOD 
METHOD First 6 residues and KTSI in second pocket were taken from t76.seq, 
METHOD because alignment had insertions disrupting those places. 
MODEL 1 
S C 0.77 
T C 0.86 
D C 0.87 
D C 0.86 
S C 0.90 
P C 0.75 
Y H 0.99 
K H 0.99 
Q H 0.98 
A H 0.95 
F H 0.88 
S H 0.72 
L H 0.57 
F C 0.43 
D C 0.64 
R C 0.69 
H C 0.86 
G C 0.90 
T C 0.93 
G C 0.85 
R C 0.58 
I E 0.51 
P E 0.50 
K C 0.60 
T C 0.67 
S C 0.71 
I H 0.46 
G H 0.98 
D H 0.99 
L H 0.98 
L H 0.98 
R H 0.96 
A H 0.93 
C H 0.75 
G C 0.70 
Q C 0.80 
N C 0.90 
P C 0.93 
T C 0.74 
L H 0.71 
A H 0.85 
E H 0.78 
I H 0.86 
T H 0.92 
E H 0.91 
I H 0.85 
E H 0.65 
S C 0.76 
T C 0.87 
L C 0.93 
P C 0.96 
A C 0.86 
E C 0.52 
V E 0.57 
D E 0.53 
M H 0.43 
E H 0.83 
Q H 0.93 
F H 0.96 
L H 0.97 
Q H 0.96 
V H 0.95 
L H 0.95 
N H 0.92 
R H 0.87 
P H 0.79 
N H 0.61 
G H 0.49 
F C 0.59 
D C 0.77 
M C 0.80 
P C 0.78 
G C 0.86 
D C 0.73 
P H 0.89 
E H 0.96 
E H 0.97 
F H 0.97 
V H 0.97 
K H 0.94 
G H 0.87 
F H 0.70 
Q H 0.39 
V E 0.45 
F C 0.45 
D C 0.66 
K C 0.64 
D C 0.73 
A C 0.88 
T C 0.92 
G C 0.82 
M C 0.53 
I E 0.44 
G C 0.40 
V H 0.78 
G H 0.94 
E H 0.96 
L H 0.98 
R H 0.99 
Y H 0.99 
V H 0.99 
L H 0.99 
T H 0.97 
S H 0.89 
L H 0.80 
G H 0.78 
E H 0.81 
K H 0.66 
L C 0.78 
S C 0.78 
N H 0.87 
E H 0.97 
E H 0.95 
M H 0.98 
D H 0.99 
E H 0.99 
L H 0.98 
L H 0.94 
K H 0.83 
G H 0.71 
V C 0.51 
P C 0.78 
V C 0.91 
K C 0.93 
D C 0.94 
G C 0.87 
M C 0.55 
V C 0.42 
N C 0.51 
Y H 0.82 
H H 0.96 
D H 0.99 
F H 0.99 
V H 0.98 
Q H 0.97 
M H 0.95 
I H 0.88 
L H 0.68 
A C 0.53 
N C 0.76 
END 
