REMARK  ----------------------------------------------------------  
REMARK  Molecule : T0076AL017_1  
REMARK  Alignment model prepared for CASP3 experiment  
REMARK  by group : SJOLANDER-THOMAS  
REMARK  ----------------------------------------------------------  
TARGET T0076   
AUTHOR 5827-4749-3439   
METHOD T0076 structure prediction   
METHOD   
METHOD As usual, we employed a two-pronged approach: (1) We scored the    
METHOD target against all the HMMs and threading models in our libraries,    
METHOD and (2) we gathered homologs to the target using PsiBLAST,    
METHOD constructed an HMM for the target and homologs (using UCSC's HMM    
METHOD software), and scored PDB.    
METHOD This yielded three sets of scores, which we then used    
METHOD to find a target-structure match.   
METHOD    
METHOD The highest-scoring HMM in the first stage of the analysis    
METHOD was constructed for the scop domain d1osa and homologs.   
METHOD The HMM constructed for the target and homologs in the   
METHOD second stage also scored this structure in first place.   
METHOD   
METHOD The alignment submitted was created by aligning the target    
METHOD and structure to the HMM constructed for the    
METHOD domain d1osa (unpublished method). The alignment is   
METHOD unaltered.   
METHOD   
MODEL 1   
REMARK  ----------------------------------------------------------  
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov  
REMARK  ----------------------------------------------------------  
REMARK  Coordinates assigned from PDB entry: 1osa  
ATOM    277  N   PRO    72      -4.075  31.317  20.119  1.00  0.00              
ATOM    278  CA  PRO    72      -3.011  30.918  21.031  1.00  0.00              
ATOM    279  C   PRO    72      -3.068  29.415  21.249  1.00  0.00              
ATOM    280  O   PRO    72      -2.052  28.779  21.494  1.00  0.00              
ATOM    281  N   GLY    73      -4.255  28.827  21.135  1.00  0.00              
ATOM    282  CA  GLY    73      -4.402  27.385  21.204  1.00  0.00              
ATOM    283  C   GLY    73      -3.746  26.686  20.031  1.00  0.00              
ATOM    284  O   GLY    73      -2.858  25.870  20.246  1.00  0.00              
ATOM    285  N   ASP    74      -4.123  27.036  18.794  1.00  0.00              
ATOM    286  CA  ASP    74      -3.510  26.443  17.622  1.00  0.00              
ATOM    287  C   ASP    74      -2.011  26.679  17.532  1.00  0.00              
ATOM    288  O   ASP    74      -1.296  25.819  17.014  1.00  0.00              
ATOM    289  N   PRO    75      -1.475  27.763  18.104  1.00  0.00              
ATOM    290  CA  PRO    75      -0.035  27.885  18.198  1.00  0.00              
ATOM    291  C   PRO    75       0.539  26.912  19.228  1.00  0.00              
ATOM    292  O   PRO    75       1.635  26.401  19.004  1.00  0.00              
ATOM    293  N   GLU    76      -0.180  26.607  20.333  1.00  0.00              
ATOM    294  CA  GLU    76       0.286  25.671  21.371  1.00  0.00              
ATOM    295  C   GLU    76       0.467  24.269  20.815  1.00  0.00              
ATOM    296  O   GLU    76       1.437  23.580  21.111  1.00  0.00              
ATOM    297  N   GLU    77      -0.499  23.883  19.985  1.00  0.00              
ATOM    298  CA  GLU    77      -0.485  22.606  19.287  1.00  0.00              
ATOM    299  C   GLU    77       0.719  22.402  18.376  1.00  0.00              
ATOM    300  O   GLU    77       1.471  21.439  18.530  1.00  0.00              
ATOM    301  N   PHE    78       0.938  23.383  17.504  1.00  0.00              
ATOM    302  CA  PHE    78       2.093  23.407  16.624  1.00  0.00              
ATOM    303  C   PHE    78       3.445  23.449  17.340  1.00  0.00              
ATOM    304  O   PHE    78       4.384  22.797  16.878  1.00  0.00              
ATOM    305  N   VAL    79       3.595  24.180  18.455  1.00  0.00              
ATOM    306  CA  VAL    79       4.818  24.174  19.261  1.00  0.00              
ATOM    307  C   VAL    79       5.036  22.808  19.919  1.00  0.00              
ATOM    308  O   VAL    79       6.167  22.347  20.045  1.00  0.00              
ATOM    309  N   LYS    80       3.951  22.162  20.341  1.00  0.00              
ATOM    310  CA  LYS    80       4.021  20.834  20.909  1.00  0.00              
ATOM    311  C   LYS    80       4.426  19.776  19.912  1.00  0.00              
ATOM    312  O   LYS    80       5.252  18.926  20.236  1.00  0.00              
ATOM    313  N   GLY    81       3.858  19.817  18.709  1.00  0.00              
ATOM    314  CA  GLY    81       4.248  18.845  17.688  1.00  0.00              
ATOM    315  C   GLY    81       5.673  19.047  17.188  1.00  0.00              
ATOM    316  O   GLY    81       6.360  18.057  16.948  1.00  0.00              
ATOM    317  N   PHE    82       6.143  20.309  17.095  1.00  0.00              
ATOM    318  CA  PHE    82       7.532  20.598  16.792  1.00  0.00              
ATOM    319  C   PHE    82       8.491  20.051  17.843  1.00  0.00              
ATOM    320  O   PHE    82       9.552  19.561  17.453  1.00  0.00              
ATOM    321  N   GLN    83       8.223  20.169  19.155  1.00  0.00              
ATOM    322  CA  GLN    83       9.154  19.652  20.142  1.00  0.00              
ATOM    323  C   GLN    83       9.175  18.125  20.218  1.00  0.00              
ATOM    324  O   GLN    83      10.204  17.598  20.649  1.00  0.00              
ATOM    325  N   VAL    84       8.147  17.377  19.784  1.00  0.00              
ATOM    326  CA  VAL    84       8.275  15.924  19.705  1.00  0.00              
ATOM    327  C   VAL    84       9.177  15.532  18.525  1.00  0.00              
ATOM    328  O   VAL    84      10.013  14.640  18.678  1.00  0.00              
ATOM    329  N   PHE    85       9.038  16.190  17.358  1.00  0.00              
ATOM    330  CA  PHE    85       9.940  15.926  16.242  1.00  0.00              
ATOM    331  C   PHE    85      11.357  16.354  16.547  1.00  0.00              
ATOM    332  O   PHE    85      12.288  15.633  16.192  1.00  0.00              
ATOM    333  N   ASP    86      11.580  17.477  17.238  1.00  0.00              
ATOM    334  CA  ASP    86      12.931  17.943  17.440  1.00  0.00              
ATOM    335  C   ASP    86      13.563  17.235  18.626  1.00  0.00              
ATOM    336  O   ASP    86      13.804  17.810  19.693  1.00  0.00              
ATOM    337  N   LYS    87      13.892  15.958  18.403  1.00  0.00              
ATOM    338  CA  LYS    87      14.336  15.081  19.471  1.00  0.00              
ATOM    339  C   LYS    87      15.503  15.593  20.268  1.00  0.00              
ATOM    340  O   LYS    87      15.502  15.422  21.476  1.00  0.00              
ATOM    341  N   ASP    88      16.455  16.298  19.692  1.00  0.00              
ATOM    342  CA  ASP    88      17.567  16.746  20.513  1.00  0.00              
ATOM    343  C   ASP    88      17.406  18.141  21.089  1.00  0.00              
ATOM    344  O   ASP    88      18.338  18.671  21.702  1.00  0.00              
ATOM    345  N   ALA    89      16.228  18.740  20.827  1.00  0.00              
ATOM    346  CA  ALA    89      15.894  20.097  21.237  1.00  0.00              
ATOM    347  C   ALA    89      16.762  21.199  20.636  1.00  0.00              
ATOM    348  O   ALA    89      16.864  22.264  21.244  1.00  0.00              
ATOM    349  N   THR    90      17.398  21.079  19.467  1.00  0.00              
ATOM    350  CA  THR    90      18.320  22.134  19.049  1.00  0.00              
ATOM    351  C   THR    90      17.669  23.206  18.185  1.00  0.00              
ATOM    352  O   THR    90      18.349  24.124  17.723  1.00  0.00              
ATOM    353  N   GLY    91      16.352  23.092  17.947  1.00  0.00              
ATOM    354  CA  GLY    91      15.638  24.072  17.145  1.00  0.00              
ATOM    355  C   GLY    91      15.436  23.584  15.714  1.00  0.00              
ATOM    356  O   GLY    91      14.726  24.180  14.902  1.00  0.00              
ATOM    357  N   MET    92      16.068  22.470  15.362  1.00  0.00              
ATOM    358  CA  MET    92      16.046  22.004  13.982  1.00  0.00              
ATOM    359  C   MET    92      15.714  20.523  13.913  1.00  0.00              
ATOM    360  O   MET    92      16.382  19.714  14.570  1.00  0.00              
ATOM    361  N   ILE    93      14.698  20.166  13.134  1.00  0.00              
ATOM    362  CA  ILE    93      14.414  18.771  12.848  1.00  0.00              
ATOM    363  C   ILE    93      15.343  18.245  11.728  1.00  0.00              
ATOM    364  O   ILE    93      15.305  18.724  10.584  1.00  0.00              
ATOM    365  N   GLY    94      16.176  17.229  12.005  1.00  0.00              
ATOM    366  CA  GLY    94      17.045  16.691  10.964  1.00  0.00              
ATOM    367  C   GLY    94      16.328  15.550  10.291  1.00  0.00              
ATOM    368  O   GLY    94      15.247  15.159  10.733  1.00  0.00              
ATOM    369  N   VAL    95      16.944  14.971   9.237  1.00  0.00              
ATOM    370  CA  VAL    95      16.362  13.828   8.543  1.00  0.00              
ATOM    371  C   VAL    95      16.263  12.570   9.412  1.00  0.00              
ATOM    372  O   VAL    95      15.260  11.868   9.358  1.00  0.00              
ATOM    373  N   GLY    96      17.262  12.348  10.286  1.00  0.00              
ATOM    374  CA  GLY    96      17.245  11.266  11.273  1.00  0.00              
ATOM    375  C   GLY    96      16.138  11.420  12.297  1.00  0.00              
ATOM    376  O   GLY    96      15.474  10.441  12.657  1.00  0.00              
ATOM    377  N   GLU    97      15.899  12.656  12.756  1.00  0.00              
ATOM    378  CA  GLU    97      14.773  12.889  13.670  1.00  0.00              
ATOM    379  C   GLU    97      13.438  12.670  13.030  1.00  0.00              
ATOM    380  O   GLU    97      12.580  12.000  13.610  1.00  0.00              
ATOM    381  N   LEU    98      13.238  13.168  11.799  1.00  0.00              
ATOM    382  CA  LEU    98      11.947  12.998  11.171  1.00  0.00              
ATOM    383  C   LEU    98      11.717  11.552  10.821  1.00  0.00              
ATOM    384  O   LEU    98      10.584  11.085  10.917  1.00  0.00              
ATOM    385  N   ARG    99      12.778  10.795  10.474  1.00  0.00              
ATOM    386  CA  ARG    99      12.588   9.396  10.110  1.00  0.00              
ATOM    387  C   ARG    99      12.237   8.536  11.325  1.00  0.00              
ATOM    388  O   ARG    99      11.398   7.645  11.261  1.00  0.00              
ATOM    389  N   TYR   100      12.873   8.843  12.460  1.00  0.00              
ATOM    390  CA  TYR   100      12.596   8.164  13.722  1.00  0.00              
ATOM    391  C   TYR   100      11.170   8.396  14.172  1.00  0.00              
ATOM    392  O   TYR   100      10.477   7.440  14.496  1.00  0.00              
ATOM    393  N   VAL   101      10.664   9.639  14.157  1.00  0.00              
ATOM    394  CA  VAL   101       9.279   9.892  14.546  1.00  0.00              
ATOM    395  C   VAL   101       8.284   9.291  13.570  1.00  0.00              
ATOM    396  O   VAL   101       7.246   8.793  13.999  1.00  0.00              
ATOM    397  N   LEU   102       8.574   9.260  12.259  1.00  0.00              
ATOM    398  CA  LEU   102       7.654   8.645  11.328  1.00  0.00              
ATOM    399  C   LEU   102       7.543   7.151  11.523  1.00  0.00              
ATOM    400  O   LEU   102       6.463   6.587  11.318  1.00  0.00              
ATOM    401  N   THR   103       8.644   6.503  11.968  1.00  0.00              
ATOM    402  CA  THR   103       8.590   5.067  12.237  1.00  0.00              
ATOM    403  C   THR   103       7.731   4.758  13.450  1.00  0.00              
ATOM    404  O   THR   103       6.918   3.832  13.425  1.00  0.00              
ATOM    405  N   SER   104       7.853   5.569  14.509  1.00  0.00              
ATOM    406  CA  SER   104       6.928   5.427  15.632  1.00  0.00              
ATOM    407  C   SER   104       5.492   5.772  15.292  1.00  0.00              
ATOM    408  O   SER   104       4.602   5.331  16.005  1.00  0.00              
ATOM    409  N   LEU   105       5.246   6.547  14.221  1.00  0.00              
ATOM    410  CA  LEU   105       3.897   6.768  13.737  1.00  0.00              
ATOM    411  C   LEU   105       3.458   5.700  12.770  1.00  0.00              
ATOM    412  O   LEU   105       2.363   5.767  12.219  1.00  0.00              
ATOM    413  N   GLY   106       4.294   4.680  12.560  1.00  0.00              
ATOM    414  CA  GLY   106       3.883   3.530  11.775  1.00  0.00              
ATOM    415  C   GLY   106       4.287   3.647  10.317  1.00  0.00              
ATOM    416  O   GLY   106       3.794   2.892   9.478  1.00  0.00              
ATOM    417  N   GLU   107       5.201   4.571  10.004  1.00  0.00              
ATOM    418  CA  GLU   107       5.616   4.746   8.617  1.00  0.00              
ATOM    419  C   GLU   107       7.093   4.505   8.447  1.00  0.00              
ATOM    420  O   GLU   107       7.881   5.367   8.815  1.00  0.00              
ATOM    421  N   LYS   108       7.488   3.353   7.899  1.00  0.00              
ATOM    422  CA  LYS   108       8.908   3.096   7.681  1.00  0.00              
ATOM    423  C   LYS   108       9.352   3.690   6.339  1.00  0.00              
ATOM    424  O   LYS   108       9.090   3.108   5.284  1.00  0.00              
ATOM    425  N   LEU   109      10.030   4.852   6.410  1.00  0.00              
ATOM    426  CA  LEU   109      10.423   5.608   5.223  1.00  0.00              
ATOM    427  C   LEU   109      11.900   5.457   4.913  1.00  0.00              
ATOM    428  O   LEU   109      12.710   5.432   5.837  1.00  0.00              
ATOM    429  N   SER   110      12.297   5.373   3.631  1.00  0.00              
ATOM    430  CA  SER   110      13.713   5.377   3.297  1.00  0.00              
ATOM    431  C   SER   110      14.374   6.737   3.498  1.00  0.00              
ATOM    432  O   SER   110      13.682   7.725   3.667  1.00  0.00              
ATOM    433  N   ASN   111      15.694   6.887   3.478  1.00  0.00              
ATOM    434  CA  ASN   111      16.310   8.193   3.564  1.00  0.00              
ATOM    435  C   ASN   111      15.961   9.038   2.346  1.00  0.00              
ATOM    436  O   ASN   111      15.842  10.250   2.456  1.00  0.00              
ATOM    437  N   GLU   112      15.741   8.426   1.189  1.00  0.00              
ATOM    438  CA  GLU   112      15.331   9.186  -0.003  1.00  0.00              
ATOM    439  C   GLU   112      13.940   9.787   0.160  1.00  0.00              
ATOM    440  O   GLU   112      13.706  10.919  -0.236  1.00  0.00              
ATOM    441  N   GLU   113      13.015   9.035   0.752  1.00  0.00              
ATOM    442  CA  GLU   113      11.667   9.523   1.017  1.00  0.00              
ATOM    443  C   GLU   113      11.658  10.710   1.961  1.00  0.00              
ATOM    444  O   GLU   113      11.078  11.754   1.654  1.00  0.00              
ATOM    445  N   MET   114      12.394  10.555   3.058  1.00  0.00              
ATOM    446  CA  MET   114      12.547  11.589   4.066  1.00  0.00              
ATOM    447  C   MET   114      13.296  12.794   3.512  1.00  0.00              
ATOM    448  O   MET   114      12.975  13.932   3.875  1.00  0.00              
ATOM    449  N   ASP   115      14.299  12.603   2.635  1.00  0.00              
ATOM    450  CA  ASP   115      15.004  13.740   2.056  1.00  0.00              
ATOM    451  C   ASP   115      14.108  14.574   1.177  1.00  0.00              
ATOM    452  O   ASP   115      14.259  15.787   1.085  1.00  0.00              
ATOM    453  N   GLU   116      13.170  13.896   0.527  1.00  0.00              
ATOM    454  CA  GLU   116      12.181  14.552  -0.311  1.00  0.00              
ATOM    455  C   GLU   116      11.213  15.374   0.543  1.00  0.00              
ATOM    456  O   GLU   116      10.836  16.504   0.201  1.00  0.00              
ATOM    457  N   GLY   120      11.882  22.788   3.216  1.00  0.00              
ATOM    458  CA  GLY   120      13.027  23.609   3.526  1.00  0.00              
ATOM    459  C   GLY   120      13.034  24.858   2.628  1.00  0.00              
ATOM    460  O   GLY   120      12.796  24.779   1.413  1.00  0.00              
ATOM    461  N   VAL   121      13.199  26.005   3.306  1.00  0.00              
ATOM    462  CA  VAL   121      13.276  27.323   2.682  1.00  0.00              
ATOM    463  C   VAL   121      14.686  27.894   2.738  1.00  0.00              
ATOM    464  O   VAL   121      15.153  28.429   1.737  1.00  0.00              
ATOM    465  N   PRO   122      15.392  27.817   3.871  1.00  0.00              
ATOM    466  CA  PRO   122      16.752  28.318   3.956  1.00  0.00              
ATOM    467  C   PRO   122      17.838  27.393   3.455  1.00  0.00              
ATOM    468  O   PRO   122      19.009  27.748   3.570  1.00  0.00              
ATOM    469  N   LYS   124      17.482  26.200   2.955  1.00  0.00              
ATOM    470  CA  LYS   124      18.430  25.337   2.266  1.00  0.00              
ATOM    471  C   LYS   124      19.418  24.598   3.159  1.00  0.00              
ATOM    472  O   LYS   124      20.431  24.119   2.641  1.00  0.00              
ATOM    473  N   ASP   125      19.204  24.462   4.485  1.00  0.00              
ATOM    474  CA  ASP   125      20.146  23.755   5.351  1.00  0.00              
ATOM    475  C   ASP   125      19.821  22.277   5.469  1.00  0.00              
ATOM    476  O   ASP   125      20.471  21.566   6.230  1.00  0.00              
ATOM    477  N   GLY   126      18.787  21.794   4.771  1.00  0.00              
ATOM    478  CA  GLY   126      18.379  20.405   4.858  1.00  0.00              
ATOM    479  C   GLY   126      17.821  20.028   6.228  1.00  0.00              
ATOM    480  O   GLY   126      17.707  18.850   6.545  1.00  0.00              
ATOM    481  N   MET   127      17.491  21.030   7.054  1.00  0.00              
ATOM    482  CA  MET   127      16.716  20.848   8.284  1.00  0.00              
ATOM    483  C   MET   127      15.420  21.646   8.229  1.00  0.00              
ATOM    484  O   MET   127      15.300  22.572   7.410  1.00  0.00              
ATOM    485  N   VAL   128      14.449  21.266   9.073  1.00  0.00              
ATOM    486  CA  VAL   128      13.170  21.974   9.169  1.00  0.00              
ATOM    487  C   VAL   128      13.221  22.794  10.474  1.00  0.00              
ATOM    488  O   VAL   128      13.239  22.199  11.545  1.00  0.00              
ATOM    489  N   ASN   129      13.255  24.134  10.463  1.00  0.00              
ATOM    490  CA  ASN   129      13.104  24.902  11.696  1.00  0.00              
ATOM    491  C   ASN   129      11.633  25.161  11.980  1.00  0.00              
ATOM    492  O   ASN   129      10.767  24.687  11.249  1.00  0.00              
ATOM    493  N   TYR   130      11.256  25.958  12.982  1.00  0.00              
ATOM    494  CA  TYR   130       9.850  26.039  13.391  1.00  0.00              
ATOM    495  C   TYR   130       8.990  26.762  12.366  1.00  0.00              
ATOM    496  O   TYR   130       7.856  26.351  12.077  1.00  0.00              
ATOM    497  N   HIS   131       9.597  27.824  11.799  1.00  0.00              
ATOM    498  CA  HIS   131       8.926  28.620  10.762  1.00  0.00              
ATOM    499  C   HIS   131       8.595  27.773   9.543  1.00  0.00              
ATOM    500  O   HIS   131       7.460  27.807   9.069  1.00  0.00              
ATOM    501  N   ASP   132       9.579  26.997   9.043  1.00  0.00              
ATOM    502  CA  ASP   132       9.318  26.064   7.952  1.00  0.00              
ATOM    503  C   ASP   132       8.325  24.968   8.326  1.00  0.00              
ATOM    504  O   ASP   132       7.498  24.555   7.508  1.00  0.00              
ATOM    505  N   PHE   133       8.365  24.519   9.596  1.00  0.00              
ATOM    506  CA  PHE   133       7.404  23.543  10.105  1.00  0.00              
ATOM    507  C   PHE   133       5.964  24.059  10.087  1.00  0.00              
ATOM    508  O   PHE   133       5.066  23.336   9.643  1.00  0.00              
ATOM    509  N   VAL   134       5.724  25.302  10.561  1.00  0.00              
ATOM    510  CA  VAL   134       4.364  25.862  10.567  1.00  0.00              
ATOM    511  C   VAL   134       3.801  26.092   9.178  1.00  0.00              
ATOM    512  O   VAL   134       2.662  25.724   8.922  1.00  0.00              
ATOM    513  N   GLN   135       4.646  26.619   8.284  1.00  0.00              
ATOM    514  CA  GLN   135       4.308  26.832   6.881  1.00  0.00              
ATOM    515  C   GLN   135       3.892  25.573   6.127  1.00  0.00              
ATOM    516  O   GLN   135       2.989  25.646   5.292  1.00  0.00              
ATOM    517  N   MET   136       4.508  24.416   6.438  1.00  0.00              
ATOM    518  CA  MET   136       4.023  23.123   5.970  1.00  0.00              
ATOM    519  C   MET   136       2.758  22.623   6.627  1.00  0.00              
ATOM    520  O   MET   136       1.942  22.010   5.948  1.00  0.00              
ATOM    521  N   ILE   137       2.573  22.818   7.938  1.00  0.00              
ATOM    522  CA  ILE   137       1.425  22.261   8.647  1.00  0.00              
ATOM    523  C   ILE   137       0.097  22.933   8.308  1.00  0.00              
ATOM    524  O   ILE   137      -0.943  22.283   8.206  1.00  0.00              
ATOM    525  N   LEU   138       0.157  24.256   8.122  1.00  0.00              
ATOM    526  CA  LEU   138      -0.999  25.078   7.798  1.00  0.00              
ATOM    527  C   LEU   138      -1.487  24.953   6.360  1.00  0.00              
ATOM    528  O   LEU   138      -2.547  25.488   6.027  1.00  0.00              
ATOM    529  N   ALA   139      -0.643  24.321   5.528  1.00  0.00              
ATOM    530  CA  ALA   139      -0.889  23.891   4.145  1.00  0.00              
ATOM    531  C   ALA   139       0.441  23.869   3.426  1.00  0.00              
ATOM    532  O   ALA   139       1.175  24.850   3.502  1.00  0.00              
END 
