REMARK  ----------------------------------------------------------  
REMARK  Molecule : T0076AL201_1  
REMARK  Alignment model prepared for CASP3 experiment  
REMARK  by group : TATSUYA-AKUTSU  
REMARK  ----------------------------------------------------------  
TARGET T0076   
AUTHOR 7648-2940-6918   
REMARK    
METHOD We align a target sequence with structurally aligned sequences   
METHOD (i.e., multiple structure alignment), where a multiple structure   
METHOD alignment is computed from results of pairwise structure alignments   
METHOD for similar structures.    
METHOD Pairwise structure alignments are computed using a computer   
METHOD program STRALIGN [1] developed by the group-leader and they are   
METHOD combined into a multiple structure alignment using a method like   
METHOD center-star alignment.   
METHOD A simple dynamic programming procedure (Smith-Waterman like procedure)   
METHOD is used for computing an alignment between a target sequence and   
METHOD the aligned sequences.   
METHOD Finally, an alignment between a target and one of the aligned   
METHOD sequences (i.e., template sequence) is extracted and refined.   
METHOD Human knowledge is also used to find template structures and   
METHOD to refine alignments.   
METHOD   
METHOD [1] T. Akutsu: Protein structure alignment using dynamic programming   
METHOD and iterative alignment, IEICE Transactions on Information and Systems,   
METHOD vol. E79-D, pp. 1629--1636, 1996.   
METHOD   
METHOD Program code of STRALIGN is available via   
METHOD http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html   
MODEL  1   
REMARK  ----------------------------------------------------------  
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov  
REMARK  ----------------------------------------------------------  
REMARK  Coordinates assigned from PDB entry: 1cm4_A  
ATOM    233  N   GLU    76      34.113  52.114  66.360  1.00  0.00              
ATOM    234  CA  GLU    76      33.523  53.438  66.221  1.00  0.00              
ATOM    235  C   GLU    76      32.004  53.462  66.309  1.00  0.00              
ATOM    236  O   GLU    76      31.265  53.609  65.336  1.00  0.00              
ATOM    237  N   GLU    77      31.544  53.339  67.556  1.00  0.00              
ATOM    238  CA  GLU    77      30.121  53.350  67.883  1.00  0.00              
ATOM    239  C   GLU    77      29.522  54.764  67.895  1.00  0.00              
ATOM    240  O   GLU    77      28.308  54.936  67.756  1.00  0.00              
ATOM    241  N   PHE    78      30.358  55.800  68.049  1.00  0.00              
ATOM    242  CA  PHE    78      29.886  57.173  68.010  1.00  0.00              
ATOM    243  C   PHE    78      29.665  57.617  66.564  1.00  0.00              
ATOM    244  O   PHE    78      28.718  58.370  66.330  1.00  0.00              
ATOM    245  N   VAL    79      30.475  57.185  65.578  1.00  0.00              
ATOM    246  CA  VAL    79      30.212  57.514  64.172  1.00  0.00              
ATOM    247  C   VAL    79      28.953  56.788  63.684  1.00  0.00              
ATOM    248  O   VAL    79      28.182  57.363  62.916  1.00  0.00              
ATOM    249  N   LYS    80      28.696  55.553  64.148  1.00  0.00              
ATOM    250  CA  LYS    80      27.521  54.792  63.735  1.00  0.00              
ATOM    251  C   LYS    80      26.227  55.429  64.218  1.00  0.00              
ATOM    252  O   LYS    80      25.252  55.487  63.467  1.00  0.00              
ATOM    253  N   GLY    81      26.240  55.938  65.460  1.00  0.00              
ATOM    254  CA  GLY    81      25.076  56.593  66.027  1.00  0.00              
ATOM    255  C   GLY    81      24.866  57.951  65.378  1.00  0.00              
ATOM    256  O   GLY    81      23.741  58.287  65.022  1.00  0.00              
ATOM    257  N   PHE    82      25.951  58.711  65.183  1.00  0.00              
ATOM    258  CA  PHE    82      25.913  60.021  64.527  1.00  0.00              
ATOM    259  C   PHE    82      25.299  59.938  63.131  1.00  0.00              
ATOM    260  O   PHE    82      24.518  60.803  62.731  1.00  0.00              
ATOM    261  N   GLN    83      25.670  58.854  62.435  1.00  0.00              
ATOM    262  CA  GLN    83      25.193  58.535  61.105  1.00  0.00              
ATOM    263  C   GLN    83      23.689  58.339  61.118  1.00  0.00              
ATOM    264  O   GLN    83      23.013  58.745  60.178  1.00  0.00              
ATOM    265  N   VAL    84      23.158  57.742  62.196  1.00  0.00              
ATOM    266  CA  VAL    84      21.722  57.530  62.323  1.00  0.00              
ATOM    267  C   VAL    84      21.014  58.881  62.474  1.00  0.00              
ATOM    268  O   VAL    84      19.970  59.086  61.856  1.00  0.00              
ATOM    269  N   PHE    85      21.580  59.840  63.221  1.00  0.00              
ATOM    270  CA  PHE    85      20.975  61.160  63.391  1.00  0.00              
ATOM    271  C   PHE    85      21.037  62.029  62.126  1.00  0.00              
ATOM    272  O   PHE    85      20.002  62.411  61.578  1.00  0.00              
ATOM    273  N   ASP    86      22.259  62.339  61.671  1.00  0.00              
ATOM    274  CA  ASP    86      22.541  63.109  60.474  1.00  0.00              
ATOM    275  C   ASP    86      22.023  62.413  59.211  1.00  0.00              
ATOM    276  O   ASP    86      22.786  61.754  58.497  1.00  0.00              
ATOM    277  N   LYS    87      20.712  62.586  58.937  1.00  0.00              
ATOM    278  CA  LYS    87      20.006  61.905  57.850  1.00  0.00              
ATOM    279  C   LYS    87      20.698  62.174  56.539  1.00  0.00              
ATOM    280  O   LYS    87      21.262  61.245  55.962  1.00  0.00              
ATOM    281  N   ASP    88      20.668  63.429  56.064  1.00  0.00              
ATOM    282  CA  ASP    88      21.453  63.773  54.902  1.00  0.00              
ATOM    283  C   ASP    88      22.835  63.930  55.505  1.00  0.00              
ATOM    284  O   ASP    88      23.071  64.690  56.445  1.00  0.00              
ATOM    285  N   ALA    89      23.699  63.057  54.997  1.00  0.00              
ATOM    286  CA  ALA    89      25.074  62.941  55.433  1.00  0.00              
ATOM    287  C   ALA    89      25.978  64.104  55.072  1.00  0.00              
ATOM    288  O   ALA    89      26.987  63.883  54.411  1.00  0.00              
ATOM    289  N   THR    90      25.666  65.331  55.510  1.00  0.00              
ATOM    290  CA  THR    90      26.527  66.476  55.262  1.00  0.00              
ATOM    291  C   THR    90      27.414  66.731  56.482  1.00  0.00              
ATOM    292  O   THR    90      28.277  67.607  56.443  1.00  0.00              
ATOM    293  N   GLY    91      27.208  65.970  57.572  1.00  0.00              
ATOM    294  CA  GLY    91      27.994  66.107  58.784  1.00  0.00              
ATOM    295  C   GLY    91      27.391  67.067  59.799  1.00  0.00              
ATOM    296  O   GLY    91      28.033  67.358  60.806  1.00  0.00              
ATOM    297  N   MET    92      26.179  67.599  59.598  1.00  0.00              
ATOM    298  CA  MET    92      25.589  68.548  60.540  1.00  0.00              
ATOM    299  C   MET    92      24.143  68.202  60.837  1.00  0.00              
ATOM    300  O   MET    92      23.272  68.340  59.976  1.00  0.00              
ATOM    301  N   ILE    93      23.886  67.683  62.043  1.00  0.00              
ATOM    302  CA  ILE    93      22.528  67.411  62.505  1.00  0.00              
ATOM    303  C   ILE    93      21.835  68.761  62.708  1.00  0.00              
ATOM    304  O   ILE    93      22.217  69.569  63.556  1.00  0.00              
ATOM    305  N   GLY    94      20.834  69.054  61.876  1.00  0.00              
ATOM    306  CA  GLY    94      20.056  70.282  62.012  1.00  0.00              
ATOM    307  C   GLY    94      19.000  70.047  63.085  1.00  0.00              
ATOM    308  O   GLY    94      18.723  68.899  63.454  1.00  0.00              
ATOM    309  N   VAL    95      18.346  71.115  63.544  1.00  0.00              
ATOM    310  CA  VAL    95      17.326  71.021  64.580  1.00  0.00              
ATOM    311  C   VAL    95      16.162  70.185  64.091  1.00  0.00              
ATOM    312  O   VAL    95      15.594  69.388  64.836  1.00  0.00              
ATOM    313  N   GLY    96      15.930  70.349  62.778  1.00  0.00              
ATOM    314  CA  GLY    96      14.907  69.655  62.020  1.00  0.00              
ATOM    315  C   GLY    96      15.083  68.148  62.045  1.00  0.00              
ATOM    316  O   GLY    96      14.134  67.429  62.350  1.00  0.00              
ATOM    317  N   GLU    97      16.305  67.676  61.755  1.00  0.00              
ATOM    318  CA  GLU    97      16.621  66.254  61.775  1.00  0.00              
ATOM    319  C   GLU    97      16.579  65.643  63.160  1.00  0.00              
ATOM    320  O   GLU    97      16.271  64.458  63.281  1.00  0.00              
ATOM    321  N   LEU    98      16.870  66.444  64.200  1.00  0.00              
ATOM    322  CA  LEU    98      16.779  65.963  65.566  1.00  0.00              
ATOM    323  C   LEU    98      15.316  65.702  65.898  1.00  0.00              
ATOM    324  O   LEU    98      14.997  64.680  66.504  1.00  0.00              
ATOM    325  N   ARG    99      14.418  66.585  65.443  1.00  0.00              
ATOM    326  CA  ARG    99      12.983  66.401  65.613  1.00  0.00              
ATOM    327  C   ARG    99      12.539  65.133  64.883  1.00  0.00              
ATOM    328  O   ARG    99      11.730  64.392  65.437  1.00  0.00              
ATOM    329  N   TYR   100      13.065  64.841  63.674  1.00  0.00              
ATOM    330  CA  TYR   100      12.741  63.612  62.960  1.00  0.00              
ATOM    331  C   TYR   100      13.131  62.390  63.796  1.00  0.00              
ATOM    332  O   TYR   100      12.328  61.464  63.923  1.00  0.00              
ATOM    333  N   VAL   101      14.328  62.387  64.410  1.00  0.00              
ATOM    334  CA  VAL   101      14.799  61.267  65.222  1.00  0.00              
ATOM    335  C   VAL   101      13.966  61.044  66.477  1.00  0.00              
ATOM    336  O   VAL   101      13.709  59.898  66.849  1.00  0.00              
ATOM    337  N   LEU   102      13.512  62.114  67.129  1.00  0.00              
ATOM    338  CA  LEU   102      12.768  61.962  68.370  1.00  0.00              
ATOM    339  C   LEU   102      11.351  61.464  68.140  1.00  0.00              
ATOM    340  O   LEU   102      10.861  60.686  68.950  1.00  0.00              
ATOM    341  N   THR   103      10.688  61.850  67.039  1.00  0.00              
ATOM    342  CA  THR   103       9.329  61.406  66.733  1.00  0.00              
ATOM    343  C   THR   103       9.323  59.922  66.389  1.00  0.00              
ATOM    344  O   THR   103       8.426  59.210  66.831  1.00  0.00              
ATOM    345  N   SER   104      10.326  59.424  65.652  1.00  0.00              
ATOM    346  CA  SER   104      10.454  58.003  65.331  1.00  0.00              
ATOM    347  C   SER   104      10.709  57.171  66.595  1.00  0.00              
ATOM    348  O   SER   104      10.340  55.999  66.655  1.00  0.00              
ATOM    349  N   LEU   105      11.348  57.771  67.615  1.00  0.00              
ATOM    350  CA  LEU   105      11.553  57.130  68.909  1.00  0.00              
ATOM    351  C   LEU   105      10.351  57.310  69.831  1.00  0.00              
ATOM    352  O   LEU   105      10.323  56.771  70.936  1.00  0.00              
ATOM    353  N   GLY   106       9.340  58.080  69.413  1.00  0.00              
ATOM    354  CA  GLY   106       8.116  58.248  70.187  1.00  0.00              
ATOM    355  C   GLY   106       7.961  59.580  70.912  1.00  0.00              
ATOM    356  O   GLY   106       6.868  59.890  71.387  1.00  0.00              
ATOM    357  N   GLU   107       9.025  60.382  71.020  1.00  0.00              
ATOM    358  CA  GLU   107       8.982  61.664  71.713  1.00  0.00              
ATOM    359  C   GLU   107       8.280  62.799  70.980  1.00  0.00              
ATOM    360  O   GLU   107       8.677  63.228  69.892  1.00  0.00              
ATOM    361  N   LYS   108       7.215  63.280  71.622  1.00  0.00              
ATOM    362  CA  LYS   108       6.479  64.436  71.143  1.00  0.00              
ATOM    363  C   LYS   108       6.947  65.587  72.018  1.00  0.00              
ATOM    364  O   LYS   108       6.621  65.641  73.205  1.00  0.00              
ATOM    365  N   LEU   109       7.747  66.497  71.457  1.00  0.00              
ATOM    366  CA  LEU   109       8.283  67.626  72.214  1.00  0.00              
ATOM    367  C   LEU   109       8.127  68.994  71.543  1.00  0.00              
ATOM    368  O   LEU   109       7.890  69.095  70.337  1.00  0.00              
ATOM    369  N   SER   110       8.235  70.073  72.334  1.00  0.00              
ATOM    370  CA  SER   110       8.068  71.449  71.855  1.00  0.00              
ATOM    371  C   SER   110       9.222  71.873  70.949  1.00  0.00              
ATOM    372  O   SER   110      10.309  71.304  71.033  1.00  0.00              
ATOM    373  N   ASN   111       8.996  72.861  70.067  1.00  0.00              
ATOM    374  CA  ASN   111      10.036  73.406  69.193  1.00  0.00              
ATOM    375  C   ASN   111      11.124  74.092  70.007  1.00  0.00              
ATOM    376  O   ASN   111      12.310  74.047  69.675  1.00  0.00              
ATOM    377  N   GLU   112      10.671  74.715  71.101  1.00  0.00              
ATOM    378  CA  GLU   112      11.544  75.322  72.090  1.00  0.00              
ATOM    379  C   GLU   112      12.473  74.271  72.687  1.00  0.00              
ATOM    380  O   GLU   112      13.649  74.539  72.919  1.00  0.00              
ATOM    381  N   GLU   113      11.930  73.072  72.908  1.00  0.00              
ATOM    382  CA  GLU   113      12.678  71.946  73.436  1.00  0.00              
ATOM    383  C   GLU   113      13.621  71.342  72.410  1.00  0.00              
ATOM    384  O   GLU   113      14.740  70.978  72.773  1.00  0.00              
ATOM    385  N   MET   114      13.210  71.282  71.127  1.00  0.00              
ATOM    386  CA  MET   114      14.045  70.747  70.051  1.00  0.00              
ATOM    387  C   MET   114      15.292  71.605  69.909  1.00  0.00              
ATOM    388  O   MET   114      16.408  71.084  69.836  1.00  0.00              
ATOM    389  N   ASP   115      15.113  72.927  69.918  1.00  0.00              
ATOM    390  CA  ASP   115      16.264  73.792  69.814  1.00  0.00              
ATOM    391  C   ASP   115      17.059  73.898  71.104  1.00  0.00              
ATOM    392  O   ASP   115      18.254  74.177  71.042  1.00  0.00              
ATOM    393  N   GLU   116      16.445  73.636  72.271  1.00  0.00              
ATOM    394  CA  GLU   116      17.132  73.666  73.560  1.00  0.00              
ATOM    395  C   GLU   116      18.178  72.561  73.537  1.00  0.00              
ATOM    396  O   GLU   116      19.326  72.782  73.916  1.00  0.00              
ATOM    397  N   LEU   117      17.793  71.397  72.992  1.00  0.00              
ATOM    398  CA  LEU   117      18.694  70.264  72.858  1.00  0.00              
ATOM    399  C   LEU   117      19.867  70.532  71.924  1.00  0.00              
ATOM    400  O   LEU   117      21.001  70.187  72.265  1.00  0.00              
ATOM    401  N   LEU   118      19.625  71.171  70.765  1.00  0.00              
ATOM    402  CA  LEU   118      20.684  71.515  69.820  1.00  0.00              
ATOM    403  C   LEU   118      21.691  72.439  70.490  1.00  0.00              
ATOM    404  O   LEU   118      22.896  72.189  70.420  1.00  0.00              
ATOM    405  N   ASP   125      27.100  77.623  65.722  1.00  0.00              
ATOM    406  CA  ASP   125      26.617  77.824  64.351  1.00  0.00              
ATOM    407  C   ASP   125      25.119  77.561  64.159  1.00  0.00              
ATOM    408  O   ASP   125      24.534  77.957  63.153  1.00  0.00              
ATOM    409  N   GLY   126      24.520  76.851  65.127  1.00  0.00              
ATOM    410  CA  GLY   126      23.088  76.576  65.163  1.00  0.00              
ATOM    411  C   GLY   126      22.710  75.129  64.879  1.00  0.00              
ATOM    412  O   GLY   126      21.526  74.782  64.818  1.00  0.00              
ATOM    413  N   MET   127      23.711  74.269  64.676  1.00  0.00              
ATOM    414  CA  MET   127      23.513  72.859  64.348  1.00  0.00              
ATOM    415  C   MET   127      24.498  72.060  65.178  1.00  0.00              
ATOM    416  O   MET   127      25.269  72.665  65.918  1.00  0.00              
ATOM    417  N   VAL   128      24.499  70.722  65.097  1.00  0.00              
ATOM    418  CA  VAL   128      25.429  69.866  65.846  1.00  0.00              
ATOM    419  C   VAL   128      26.260  69.050  64.859  1.00  0.00              
ATOM    420  O   VAL   128      25.697  68.292  64.064  1.00  0.00              
ATOM    421  N   ASN   129      27.592  69.192  64.859  1.00  0.00              
ATOM    422  CA  ASN   129      28.414  68.351  64.000  1.00  0.00              
ATOM    423  C   ASN   129      28.984  67.140  64.743  1.00  0.00              
ATOM    424  O   ASN   129      28.670  66.894  65.911  1.00  0.00              
ATOM    425  N   TYR   130      29.839  66.378  64.049  1.00  0.00              
ATOM    426  CA  TYR   130      30.448  65.178  64.588  1.00  0.00              
ATOM    427  C   TYR   130      31.400  65.412  65.749  1.00  0.00              
ATOM    428  O   TYR   130      31.271  64.775  66.790  1.00  0.00              
ATOM    429  N   HIS   131      32.353  66.328  65.604  1.00  0.00              
ATOM    430  CA  HIS   131      33.354  66.573  66.624  1.00  0.00              
ATOM    431  C   HIS   131      32.754  67.098  67.920  1.00  0.00              
ATOM    432  O   HIS   131      33.388  67.037  68.971  1.00  0.00              
ATOM    433  N   ASP   132      31.510  67.588  67.848  1.00  0.00              
ATOM    434  CA  ASP   132      30.749  68.039  69.000  1.00  0.00              
ATOM    435  C   ASP   132      29.905  66.928  69.591  1.00  0.00              
ATOM    436  O   ASP   132      29.682  66.894  70.804  1.00  0.00              
ATOM    437  N   PHE   133      29.417  66.036  68.719  1.00  0.00              
ATOM    438  CA  PHE   133      28.668  64.842  69.117  1.00  0.00              
ATOM    439  C   PHE   133      29.562  63.894  69.928  1.00  0.00              
ATOM    440  O   PHE   133      29.162  63.374  70.972  1.00  0.00              
ATOM    441  N   VAL   134      30.798  63.703  69.442  1.00  0.00              
ATOM    442  CA  VAL   134      31.796  62.860  70.079  1.00  0.00              
ATOM    443  C   VAL   134      32.095  63.441  71.444  1.00  0.00              
ATOM    444  O   VAL   134      32.169  62.704  72.421  1.00  0.00              
ATOM    445  N   GLN   135      32.205  64.772  71.518  1.00  0.00              
ATOM    446  CA  GLN   135      32.559  65.405  72.764  1.00  0.00              
ATOM    447  C   GLN   135      31.439  65.393  73.779  1.00  0.00              
ATOM    448  O   GLN   135      31.724  65.237  74.967  1.00  0.00              
ATOM    449  N   MET   136      30.169  65.507  73.364  1.00  0.00              
ATOM    450  CA  MET   136      29.082  65.473  74.333  1.00  0.00              
ATOM    451  C   MET   136      28.917  64.058  74.881  1.00  0.00              
ATOM    452  O   MET   136      28.353  63.845  75.957  1.00  0.00              
ATOM    453  N   ILE   137      29.432  63.082  74.123  1.00  0.00              
ATOM    454  CA  ILE   137      29.488  61.710  74.577  1.00  0.00              
ATOM    455  C   ILE   137      30.640  61.504  75.549  1.00  0.00              
ATOM    456  O   ILE   137      30.455  60.918  76.615  1.00  0.00              
ATOM    457  N   LEU   138      31.827  62.018  75.201  1.00  0.00              
ATOM    458  CA  LEU   138      33.027  61.865  76.015  1.00  0.00              
ATOM    459  C   LEU   138      33.159  62.965  77.063  1.00  0.00              
ATOM    460  O   LEU   138      33.514  62.640  78.195  1.00  0.00              
END 
