REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0077AL009_3 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : XU-YING 
REMARK  ---------------------------------------------------------- 
TARGET T0077  
AUTHOR 4798-1984-8383  
REMARK CASP-3 target T0077, Ribosomal protein L30  
REMARK  
METHOD This prediction is based, in part, on a threading algorithm described in  
METHOD three publications:  
METHOD (i) "An Efficient Computational Method for Globally Optimal Threading",  
METHOD by Y. Xu, D. Xu, and E.C. Uberbacher, Journal of Computational Biology,   
METHOD Vol. 5(3), pp. 609-626, 1998.  
METHOD (ii) "A New Method for Modeling and Solving the Protein Fold Recognition  
METHOD Problem", by Y. Xu, D. Xu, and E.C. Uberbacher, Proc. of RECOMB 98  
METHOD Second Annual Int'l Conf. on Computational Molecular Biology  
METHOD March 22-25, 1998, NEW York, NY, ACM Press, pp. 285-292.  
METHOD (iii) "A polynomial-time algorithm for a class of protein threading  
METHOD problems", by Ying Xu and Edward C. Uberbacher, CABIOS, Vol. 12 (6),  
METHOD pp.511-517, 1996.  
METHOD  
METHOD  
METHOD The prediction is also based, in part, on a different threading algorithm  
METHOD described in the following publication:  
METHOD (iv) "A fast, reliable method for threading", by O.H. Crawford, submitted  
METHOD to Bioinformatics (journal)  
METHOD  
METHOD  
METHOD The energy model employed in the threading is based on improvements and  
METHOD extensions of the energy modeling described in Refs. (ii) and (iii)  
METHOD and in the following paper:  
METHOD (v) "Protein Fold Recognition at the Secondary Structure Level",  
METHOD by D. Xu, M.A. Unseren, Y. Xu, and E.C. Uberbacher, Submitted.  
METHOD  
METHOD  
METHOD  
METHOD Members of Oak Ridge National Laboratory's Computational Biosciences  
METHOD Section participating in CASP3  include (in alphabetical order):  
METHOD Oakley Crawford, J. Ralph Einstein, Frank W. Larimer, Richard Mural,  
METHOD Edward C. Uberbacher, Michael A. Unseren, Dong Xu, Ying Xu, and Ge Zhang  
MODEL  3 UNREFINED   
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1sei_B 
ATOM      1  N   GLU     8      63.445  25.890  19.052  1.00  0.00              
ATOM      2  CA  GLU     8      64.877  26.007  19.311  1.00  0.00              
ATOM      3  C   GLU     8      65.685  25.670  18.053  1.00  0.00              
ATOM      4  O   GLU     8      66.527  26.471  17.633  1.00  0.00              
ATOM      5  N   SER     9      65.437  24.494  17.420  1.00  0.00              
ATOM      6  CA  SER     9      66.202  24.167  16.200  1.00  0.00              
ATOM      7  C   SER     9      65.903  25.219  15.121  1.00  0.00              
ATOM      8  O   SER     9      66.733  25.496  14.252  1.00  0.00              
ATOM      9  N   ILE    10      64.704  25.798  15.175  1.00  0.00              
ATOM     10  CA  ILE    10      64.311  26.811  14.213  1.00  0.00              
ATOM     11  C   ILE    10      65.126  28.077  14.463  1.00  0.00              
ATOM     12  O   ILE    10      65.556  28.722  13.523  1.00  0.00              
ATOM     13  N   ASN    11      65.295  28.449  15.728  1.00  0.00              
ATOM     14  CA  ASN    11      66.078  29.626  16.102  1.00  0.00              
ATOM     15  C   ASN    11      67.517  29.409  15.619  1.00  0.00              
ATOM     16  O   ASN    11      68.156  30.333  15.108  1.00  0.00              
ATOM     17  N   GLN    12      68.001  28.174  15.744  1.00  0.00              
ATOM     18  CA  GLN    12      69.341  27.830  15.291  1.00  0.00              
ATOM     19  C   GLN    12      69.484  28.070  13.798  1.00  0.00              
ATOM     20  O   GLN    12      70.419  28.748  13.353  1.00  0.00              
ATOM     21  N   LYS    13      68.558  27.531  13.014  1.00  0.00              
ATOM     22  CA  LYS    13      68.612  27.707  11.573  1.00  0.00              
ATOM     23  C   LYS    13      68.573  29.185  11.160  1.00  0.00              
ATOM     24  O   LYS    13      69.319  29.628  10.270  1.00  0.00              
ATOM     25  N   LEU    14      67.692  29.943  11.810  1.00  0.00              
ATOM     26  CA  LEU    14      67.506  31.363  11.514  1.00  0.00              
ATOM     27  C   LEU    14      68.743  32.166  11.903  1.00  0.00              
ATOM     28  O   LEU    14      69.131  33.099  11.198  1.00  0.00              
ATOM     29  N   ALA    15      69.354  31.806  13.029  1.00  0.00              
ATOM     30  CA  ALA    15      70.558  32.499  13.480  1.00  0.00              
ATOM     31  C   ALA    15      71.701  32.319  12.493  1.00  0.00              
ATOM     32  O   ALA    15      72.420  33.270  12.164  1.00  0.00              
ATOM     33  N   LEU    16      71.844  31.093  12.005  1.00  0.00              
ATOM     34  CA  LEU    16      72.890  30.755  11.055  1.00  0.00              
ATOM     35  C   LEU    16      72.674  31.493   9.752  1.00  0.00              
ATOM     36  O   LEU    16      73.625  32.037   9.192  1.00  0.00              
ATOM     37  N   VAL    17      71.435  31.538   9.261  1.00  0.00              
ATOM     38  CA  VAL    17      71.152  32.267   8.015  1.00  0.00              
ATOM     39  C   VAL    17      71.454  33.749   8.243  1.00  0.00              
ATOM     40  O   VAL    17      72.013  34.410   7.381  1.00  0.00              
ATOM     41  N   ILE    18      71.081  34.255   9.415  1.00  0.00              
ATOM     42  CA  ILE    18      71.301  35.652   9.781  1.00  0.00              
ATOM     43  C   ILE    18      72.789  35.990   9.679  1.00  0.00              
ATOM     44  O   ILE    18      73.201  36.890   8.932  1.00  0.00              
ATOM     45  N   LYS    19      73.585  35.231  10.421  1.00  0.00              
ATOM     46  CA  LYS    19      75.032  35.374  10.432  1.00  0.00              
ATOM     47  C   LYS    19      75.661  35.278   9.047  1.00  0.00              
ATOM     48  O   LYS    19      76.473  36.133   8.678  1.00  0.00              
ATOM     49  N   LYS    22      76.571  30.446   0.583  1.00  0.00              
ATOM     50  CA  LYS    22      75.824  29.293   1.065  1.00  0.00              
ATOM     51  C   LYS    22      76.117  29.026   2.525  1.00  0.00              
ATOM     52  O   LYS    22      76.963  29.682   3.138  1.00  0.00              
ATOM     53  N   TYR    23      75.390  28.062   3.071  1.00  0.00              
ATOM     54  CA  TYR    23      75.558  27.642   4.437  1.00  0.00              
ATOM     55  C   TYR    23      74.855  26.290   4.526  1.00  0.00              
ATOM     56  O   TYR    23      74.077  25.936   3.635  1.00  0.00              
ATOM     57  N   THR    24      75.171  25.532   5.574  1.00  0.00              
ATOM     58  CA  THR    24      74.612  24.209   5.803  1.00  0.00              
ATOM     59  C   THR    24      74.102  24.073   7.236  1.00  0.00              
ATOM     60  O   THR    24      74.674  24.627   8.170  1.00  0.00              
ATOM     61  N   LEU    25      73.017  23.333   7.396  1.00  0.00              
ATOM     62  CA  LEU    25      72.402  23.123   8.698  1.00  0.00              
ATOM     63  C   LEU    25      71.796  21.711   8.678  1.00  0.00              
ATOM     64  O   LEU    25      71.385  21.235   7.623  1.00  0.00              
ATOM     65  N   GLY    26      71.824  20.989   9.816  1.00  0.00              
ATOM     66  CA  GLY    26      71.269  19.631   9.904  1.00  0.00              
ATOM     67  C   GLY    26      69.839  19.639   9.393  1.00  0.00              
ATOM     68  O   GLY    26      69.058  20.506   9.769  1.00  0.00              
ATOM     69  N   TYR    27      60.646  20.154   9.142  1.00  0.00              
ATOM     70  CA  TYR    27      60.240  21.547   9.323  1.00  0.00              
ATOM     71  C   TYR    27      61.245  22.548   8.755  1.00  0.00              
ATOM     72  O   TYR    27      60.852  23.572   8.183  1.00  0.00              
ATOM     73  N   LYS    28      62.535  22.245   8.896  1.00  0.00              
ATOM     74  CA  LYS    28      63.570  23.112   8.361  1.00  0.00              
ATOM     75  C   LYS    28      63.477  23.093   6.866  1.00  0.00              
ATOM     76  O   LYS    28      63.660  24.115   6.217  1.00  0.00              
ATOM     77  N   SER    29      63.142  21.941   6.307  1.00  0.00              
ATOM     78  CA  SER    29      63.005  21.849   4.867  1.00  0.00              
ATOM     79  C   SER    29      61.794  22.655   4.391  1.00  0.00              
ATOM     80  O   SER    29      61.848  23.310   3.348  1.00  0.00              
ATOM     81  N   THR    30      60.707  22.599   5.163  1.00  0.00              
ATOM     82  CA  THR    30      59.487  23.344   4.853  1.00  0.00              
ATOM     83  C   THR    30      59.783  24.838   4.914  1.00  0.00              
ATOM     84  O   THR    30      59.313  25.598   4.067  1.00  0.00              
ATOM     85  N   VAL    31      60.566  25.268   5.900  1.00  0.00              
ATOM     86  CA  VAL    31      60.947  26.676   5.977  1.00  0.00              
ATOM     87  C   VAL    31      61.809  27.112   4.770  1.00  0.00              
ATOM     88  O   VAL    31      61.601  28.209   4.219  1.00  0.00              
ATOM     89  N   LYS    32      62.769  26.272   4.360  1.00  0.00              
ATOM     90  CA  LYS    32      63.623  26.560   3.191  1.00  0.00              
ATOM     91  C   LYS    32      62.808  26.675   1.899  1.00  0.00              
ATOM     92  O   LYS    32      63.101  27.510   1.029  1.00  0.00              
ATOM     93  N   SER    33      61.798  25.815   1.751  1.00  0.00              
ATOM     94  CA  SER    33      60.924  25.853   0.581  1.00  0.00              
ATOM     95  C   SER    33      60.200  27.188   0.502  1.00  0.00              
ATOM     96  O   SER    33      60.055  27.743  -0.581  1.00  0.00              
ATOM     97  N   LEU    34      59.709  27.672   1.642  1.00  0.00              
ATOM     98  CA  LEU    34      59.011  28.964   1.709  1.00  0.00              
ATOM     99  C   LEU    34      59.946  30.133   1.377  1.00  0.00              
ATOM    100  O   LEU    34      59.622  30.971   0.535  1.00  0.00              
ATOM    101  N   ARG    35      61.114  30.177   2.020  1.00  0.00              
ATOM    102  CA  ARG    35      62.090  31.239   1.766  1.00  0.00              
ATOM    103  C   ARG    35      62.427  31.254   0.287  1.00  0.00              
ATOM    104  O   ARG    35      62.568  32.303  -0.323  1.00  0.00              
ATOM    105  N   GLN    36      62.564  30.072  -0.293  1.00  0.00              
ATOM    106  CA  GLN    36      62.890  29.937  -1.705  1.00  0.00              
ATOM    107  C   GLN    36      61.746  30.405  -2.586  1.00  0.00              
ATOM    108  O   GLN    36      61.921  31.181  -3.514  1.00  0.00              
ATOM    109  N   SER    39      68.178  31.817  -2.814  1.00  0.00              
ATOM    110  CA  SER    39      68.264  31.412  -4.201  1.00  0.00              
ATOM    111  C   SER    39      67.833  29.956  -4.406  1.00  0.00              
ATOM    112  O   SER    39      67.105  29.648  -5.343  1.00  0.00              
ATOM    113  N   LYS    40      68.250  29.060  -3.517  1.00  0.00              
ATOM    114  CA  LYS    40      67.889  27.647  -3.642  1.00  0.00              
ATOM    115  C   LYS    40      68.404  26.911  -2.411  1.00  0.00              
ATOM    116  O   LYS    40      68.970  27.522  -1.518  1.00  0.00              
ATOM    117  N   LEU    41      68.153  25.610  -2.344  1.00  0.00              
ATOM    118  CA  LEU    41      68.614  24.764  -1.251  1.00  0.00              
ATOM    119  C   LEU    41      68.653  23.330  -1.786  1.00  0.00              
ATOM    120  O   LEU    41      68.079  23.037  -2.842  1.00  0.00              
ATOM    121  N   ILE    42      69.390  22.457  -1.115  1.00  0.00              
ATOM    122  CA  ILE    42      69.442  21.067  -1.534  1.00  0.00              
ATOM    123  C   ILE    42      69.680  20.161  -0.341  1.00  0.00              
ATOM    124  O   ILE    42      70.238  20.589   0.678  1.00  0.00              
ATOM    125  N   ILE    43      69.126  18.959  -0.409  1.00  0.00              
ATOM    126  CA  ILE    43      69.297  18.008   0.661  1.00  0.00              
ATOM    127  C   ILE    43      70.550  17.218   0.289  1.00  0.00              
ATOM    128  O   ILE    43      70.686  16.750  -0.847  1.00  0.00              
ATOM    129  N   ILE    44      71.436  17.036   1.256  1.00  0.00              
ATOM    130  CA  ILE    44      72.693  16.347   1.021  1.00  0.00              
ATOM    131  C   ILE    44      72.937  15.463   2.216  1.00  0.00              
ATOM    132  O   ILE    44      72.368  15.707   3.274  1.00  0.00              
ATOM    133  N   ALA    45      73.698  14.390   2.033  1.00  0.00              
ATOM    134  CA  ALA    45      74.035  13.494   3.140  1.00  0.00              
ATOM    135  C   ALA    45      75.552  13.406   3.298  1.00  0.00              
ATOM    136  O   ALA    45      76.280  13.168   2.332  1.00  0.00              
ATOM    137  N   ARG    52      76.018  13.588   4.525  1.00  0.00              
ATOM    138  CA  ARG    52      77.442  13.589   4.831  1.00  0.00              
ATOM    139  C   ARG    52      77.673  12.628   5.979  1.00  0.00              
ATOM    140  O   ARG    52      77.193  12.865   7.084  1.00  0.00              
ATOM    141  N   LYS    53      78.415  11.554   5.721  1.00  0.00              
ATOM    142  CA  LYS    53      78.703  10.534   6.739  1.00  0.00              
ATOM    143  C   LYS    53      77.367  10.034   7.253  1.00  0.00              
ATOM    144  O   LYS    53      77.182   9.816   8.444  1.00  0.00              
ATOM    145  N   SER    54      76.428   9.883   6.329  1.00  0.00              
ATOM    146  CA  SER    54      75.079   9.436   6.644  1.00  0.00              
ATOM    147  C   SER    54      74.268  10.428   7.479  1.00  0.00              
ATOM    148  O   SER    54      73.207  10.084   8.008  1.00  0.00              
ATOM    149  N   GLU    55      74.743  11.666   7.565  1.00  0.00              
ATOM    150  CA  GLU    55      74.037  12.695   8.309  1.00  0.00              
ATOM    151  C   GLU    55      73.321  13.588   7.307  1.00  0.00              
ATOM    152  O   GLU    55      73.949  14.082   6.382  1.00  0.00              
ATOM    153  N   SER    63      72.015  13.776   7.487  1.00  0.00              
ATOM    154  CA  SER    63      71.238  14.614   6.589  1.00  0.00              
ATOM    155  C   SER    63      71.474  16.103   6.789  1.00  0.00              
ATOM    156  O   SER    63      71.286  16.626   7.889  1.00  0.00              
ATOM    157  N   LYS    64      71.785  16.795   5.696  1.00  0.00              
ATOM    158  CA  LYS    64      72.080  18.226   5.700  1.00  0.00              
ATOM    159  C   LYS    64      71.323  19.040   4.629  1.00  0.00              
ATOM    160  O   LYS    64      71.106  18.585   3.498  1.00  0.00              
ATOM    161  N   THR    65      70.956  20.265   4.981  1.00  0.00              
ATOM    162  CA  THR    65      70.287  21.156   4.038  1.00  0.00              
ATOM    163  C   THR    65      71.301  22.220   3.654  1.00  0.00              
ATOM    164  O   THR    65      71.809  22.924   4.525  1.00  0.00              
ATOM    165  N   LYS    66      71.656  22.292   2.377  1.00  0.00              
ATOM    166  CA  LYS    66      72.597  23.313   1.931  1.00  0.00              
ATOM    167  C   LYS    66      71.813  24.452   1.301  1.00  0.00              
ATOM    168  O   LYS    66      71.196  24.287   0.240  1.00  0.00              
ATOM    169  N   VAL    67      71.887  25.607   1.952  1.00  0.00              
ATOM    170  CA  VAL    67      71.178  26.804   1.540  1.00  0.00              
ATOM    171  C   VAL    67      72.051  27.811   0.812  1.00  0.00              
ATOM    172  O   VAL    67      73.098  28.212   1.304  1.00  0.00              
ATOM    173  N   TYR    68      71.579  28.225  -0.356  1.00  0.00              
ATOM    174  CA  TYR    68      72.253  29.210  -1.186  1.00  0.00              
ATOM    175  C   TYR    68      71.580  30.567  -1.029  1.00  0.00              
ATOM    176  O   TYR    68      70.435  30.764  -1.464  1.00  0.00              
ATOM    177  N   TYR    69      72.313  31.500  -0.430  1.00  0.00              
ATOM    178  CA  TYR    69      71.825  32.840  -0.206  1.00  0.00              
ATOM    179  C   TYR    69      71.714  33.633  -1.486  1.00  0.00              
ATOM    180  O   TYR    69      72.310  33.293  -2.511  1.00  0.00              
ATOM    181  N   VAL    81      65.330  38.120  10.077  1.00  0.00              
ATOM    182  CA  VAL    81      64.685  36.833  10.305  1.00  0.00              
ATOM    183  C   VAL    81      64.566  36.771  11.799  1.00  0.00              
ATOM    184  O   VAL    81      65.535  37.019  12.507  1.00  0.00              
ATOM    185  N   GLY    82      63.396  36.405  12.290  1.00  0.00              
ATOM    186  CA  GLY    82      63.195  36.339  13.714  1.00  0.00              
ATOM    187  C   GLY    82      62.338  35.115  14.020  1.00  0.00              
ATOM    188  O   GLY    82      61.452  34.752  13.239  1.00  0.00              
ATOM    189  N   LYS    83      62.686  34.432  15.105  1.00  0.00              
ATOM    190  CA  LYS    83      61.951  33.267  15.584  1.00  0.00              
ATOM    191  C   LYS    83      60.913  33.896  16.531  1.00  0.00              
ATOM    192  O   LYS    83      61.264  34.712  17.396  1.00  0.00              
ATOM    193  N   PHE    85      50.091  31.941  19.388  1.00  0.00              
ATOM    194  CA  PHE    85      49.093  31.165  18.669  1.00  0.00              
ATOM    195  C   PHE    85      48.023  32.128  18.155  1.00  0.00              
ATOM    196  O   PHE    85      47.642  33.090  18.816  1.00  0.00              
ATOM    197  N   ARG    86      47.504  31.814  16.991  1.00  0.00              
ATOM    198  CA  ARG    86      46.531  32.647  16.349  1.00  0.00              
ATOM    199  C   ARG    86      45.401  31.771  15.759  1.00  0.00              
ATOM    200  O   ARG    86      45.647  30.707  15.185  1.00  0.00              
ATOM    201  N   VAL    90      56.894  38.260   5.692  1.00  0.00              
ATOM    202  CA  VAL    90      56.136  37.020   5.677  1.00  0.00              
ATOM    203  C   VAL    90      56.094  36.434   7.064  1.00  0.00              
ATOM    204  O   VAL    90      57.106  36.454   7.771  1.00  0.00              
ATOM    205  N   SER    91      54.919  35.953   7.469  1.00  0.00              
ATOM    206  CA  SER    91      54.769  35.302   8.755  1.00  0.00              
ATOM    207  C   SER    91      54.742  33.800   8.445  1.00  0.00              
ATOM    208  O   SER    91      54.135  33.383   7.454  1.00  0.00              
ATOM    209  N   ILE    92      55.413  32.994   9.259  1.00  0.00              
ATOM    210  CA  ILE    92      55.447  31.550   9.034  1.00  0.00              
ATOM    211  C   ILE    92      54.768  30.888  10.207  1.00  0.00              
ATOM    212  O   ILE    92      55.135  31.100  11.363  1.00  0.00              
ATOM    213  N   LEU    93      53.752  30.092   9.887  1.00  0.00              
ATOM    214  CA  LEU    93      52.953  29.423  10.892  1.00  0.00              
ATOM    215  C   LEU    93      53.120  27.933  10.822  1.00  0.00              
ATOM    216  O   LEU    93      53.264  27.349   9.751  1.00  0.00              
ATOM    217  N   GLU    94      53.051  27.320  11.982  1.00  0.00              
ATOM    218  CA  GLU    94      53.085  25.887  12.064  1.00  0.00              
ATOM    219  C   GLU    94      51.593  25.579  12.257  1.00  0.00              
ATOM    220  O   GLU    94      50.985  26.071  13.203  1.00  0.00              
ATOM    221  N   ALA    95      50.996  24.823  11.343  1.00  0.00              
ATOM    222  CA  ALA    95      49.589  24.505  11.472  1.00  0.00              
ATOM    223  C   ALA    95      49.333  23.011  11.316  1.00  0.00              
ATOM    224  O   ALA    95      50.250  22.223  11.059  1.00  0.00              
ATOM    225  N   ASP    99      50.383  21.757   8.148  1.00  0.00              
ATOM    226  CA  ASP    99      51.788  21.966   7.878  1.00  0.00              
ATOM    227  C   ASP    99      52.289  23.391   8.038  1.00  0.00              
ATOM    228  O   ASP    99      51.620  24.239   8.626  1.00  0.00              
ATOM    229  N   ILE   100      53.509  23.624   7.567  1.00  0.00              
ATOM    230  CA  ILE   100      54.127  24.931   7.646  1.00  0.00              
ATOM    231  C   ILE   100      53.609  25.730   6.469  1.00  0.00              
ATOM    232  O   ILE   100      53.691  25.298   5.321  1.00  0.00              
ATOM    233  N   LEU   101      53.071  26.905   6.747  1.00  0.00              
ATOM    234  CA  LEU   101      52.500  27.723   5.689  1.00  0.00              
ATOM    235  C   LEU   101      52.792  29.176   5.969  1.00  0.00              
ATOM    236  O   LEU   101      53.097  29.534   7.091  1.00  0.00              
ATOM    237  N   THR   102      52.654  30.019   4.966  1.00  0.00              
ATOM    238  CA  THR   102      52.847  31.439   5.178  1.00  0.00              
ATOM    239  C   THR   102      51.486  31.986   5.621  1.00  0.00              
ATOM    240  O   THR   102      50.475  31.308   5.464  1.00  0.00              
END
