PFRMAT AL                                                               
TARGET T0077                                                            
REMARK ================================================================ 
AUTHOR 5601-8785-5692                                                   
REMARK Ralf Thiele, GMD,                                                
REMARK Ralf Zimmer, GMD,                                                
REMARK German National Research Center for Information Technology       
REMARK Institute for Algorithms and Scientific Computing                
REMARK ================================================================ 
METHOD A reduced candidate list is produced via ToPLign [1]             
METHOD sequence/profile alignments, 123D [2] and RDP [3].               
METHOD The top scoring candidates from this list and the                
METHOD corresponding refined alignments have been produced              
METHOD with RDP [3] using newly derived modifications of                
METHOD contact capacity [2] and pair interaction potentials.            
METHOD References:                                                      
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer: 
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign", 
METHOD     GMD, 1994-98.                                                
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:           
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment  
METHOD     and Contact Capacity Potentials",                            
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publ. Co.,  
METHOD     1996, 53--72.                                                
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:             
METHOD     "Recursive Dynamic Programming for Adaptive Sequence         
METHOD     and Structure Alignment",                                    
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.    
REMARK ================================================================ 
MODEL  2                                                                
PARENT NONE 
TER                                                                     
END                                                                     
