 
PFRMAT AL 
TARGET T0079 
AUTHOR 4139-4764-1095 
METHOD 1) Blast was used to find homologues to the target, and   
METHOD    a multiple sequence alignment was constructed from 
METHOD    these sequences. 
METHOD 2) Secondary structure was predicted with predator. 
METHOD 3) A hidden Markov model using both secondary structure and 
METHOD    sequence information was built from the alignment and 
METHOD    run against a database containing a set of sequences with 
METHOD    known structure. 
METHOD 4) The sequence giving the best alignment was chosen among   
METHOD    those with high scores. 
METHOD 5) The hidden Markov model for the chosen sequence was used    
METHOD    to get the final alignment. 
MODEL 1   
REMARK The parent-none fields below really just indicate 
REMARK that the corresponding residue(s) are not aligned 
PARENT NONE 1 1 
TER 
END 
