 
PFRMAT AL 
TARGET T0079 
AUTHOR 4139-4764-1095 
METHOD 1) Blast was used to find homologues to the target, and   
METHOD    a multiple sequence alignment was constructed from 
METHOD    these sequences. 
METHOD 2) Secondary structure was predicted with predator. 
METHOD 3) A hidden Markov model using both secondary structure and 
METHOD    sequence information was built from the alignment and 
METHOD    run against a database containing a set of sequences with 
METHOD    known structure. 
METHOD 4) The sequence giving the best alignment was chosen among   
METHOD    those with high scores. 
MODEL 3 
REMARK The parent-none fields below really just indicate 
REMARK that the corresponding residues are not aligned 
PARENT NONE 122 125 
TER 
END 
