REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0079AL212_2 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BRYANT 
REMARK  ---------------------------------------------------------- 
TARGET T0079  
REMARK =======================================================================  
AUTHOR 2738-1421-4442  
REMARK This prediction was prepared by Anna Panchenko, Aron Marchler-Bauer, and  
REMARK Steve Bryant, NCBI.   
REMARK =======================================================================  
METHOD Predictions were made with the potential and alignment model used in   
METHOD CASP1 and CASP2 predictions, as described by Madej et al. in Proteins   
METHOD 23:356-369, 1995. Convergence control has been added to the Gibbs-  
METHOD Sampling alignment model. In addition to contact-based threading   
METHOD potentials, PSSMs summarizing sequence conservation in the family   
METHOD represented by the template structure are used to score threading  
METHOD alignments. Threading "cores" summarizing the conserved substructure   
METHOD in the templates used for models below have been based on structure  
METHOD superpositions generated by VAST (Gibrat et al., Curr Opin Struct  
METHOD Biol 1996 Jun;6(3):377-385 ).  
METHOD The alignments have been calculated with the Gibbs Sampling threading  
METHOD engine. The template has been identifed based on the presence  
METHOD of the repeated helix-turn-helix motif in the target and based on  
METHOD sequence similarity searches (BLAST). No threading database search  
METHOD seemed necessary. Attempts to align the target sequence to the dimer  
METHOD of the template (and to account for the repeated motif in this way)  
METHOD have been unsuccessful - the target sequence seems to short. Instead  
METHOD we list alignments for two separate regions of the target sequence,  
METHOD residues 1-64 and residues 65-129. Both of them have been aligned to  
METHOD the same template, and we do NOT specify the overall topological  
METHOD arrangement of the two "domains" with respect to each other.   
REMARK =======================================================================  
MODEL  2  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1smt_A 
ATOM      1  N   MET    65       8.230  52.821  30.154  1.00  0.00              
ATOM      2  CA  MET    65       6.816  52.511  30.026  1.00  0.00              
ATOM      3  C   MET    65       6.181  52.469  31.387  1.00  0.00              
ATOM      4  O   MET    65       5.065  52.972  31.563  1.00  0.00              
ATOM      5  N   THR    66       6.900  51.883  32.348  1.00  0.00              
ATOM      6  CA  THR    66       6.407  51.765  33.719  1.00  0.00              
ATOM      7  C   THR    66       6.264  53.113  34.419  1.00  0.00              
ATOM      8  O   THR    66       5.341  53.306  35.209  1.00  0.00              
ATOM      9  N   GLU    67       7.171  54.043  34.134  1.00  0.00              
ATOM     10  CA  GLU    67       7.084  55.368  34.738  1.00  0.00              
ATOM     11  C   GLU    67       5.841  56.066  34.218  1.00  0.00              
ATOM     12  O   GLU    67       5.207  56.816  34.942  1.00  0.00              
ATOM     13  N   ILE    68       5.513  55.826  32.952  1.00  0.00              
ATOM     14  CA  ILE    68       4.323  56.410  32.346  1.00  0.00              
ATOM     15  C   ILE    68       3.076  55.786  32.954  1.00  0.00              
ATOM     16  O   ILE    68       2.124  56.489  33.273  1.00  0.00              
ATOM     17  N   ALA    69       3.095  54.465  33.121  1.00  0.00              
ATOM     18  CA  ALA    69       1.967  53.759  33.700  1.00  0.00              
ATOM     19  C   ALA    69       1.748  54.155  35.152  1.00  0.00              
ATOM     20  O   ALA    69       0.602  54.225  35.603  1.00  0.00              
ATOM     21  N   GLN    70       2.836  54.441  35.873  1.00  0.00              
ATOM     22  CA  GLN    70       2.732  54.812  37.287  1.00  0.00              
ATOM     23  C   GLN    70       1.951  56.112  37.486  1.00  0.00              
ATOM     24  O   GLN    70       1.365  56.336  38.537  1.00  0.00              
ATOM     25  N   LYS    71       1.969  56.985  36.485  1.00  0.00              
ATOM     26  CA  LYS    71       1.236  58.237  36.579  1.00  0.00              
ATOM     27  C   LYS    71      -0.231  57.966  36.237  1.00  0.00              
ATOM     28  O   LYS    71      -1.137  58.336  36.997  1.00  0.00              
ATOM     29  N   LEU    72      -0.457  57.245  35.138  1.00  0.00              
ATOM     30  CA  LEU    72      -1.814  56.917  34.707  1.00  0.00              
ATOM     31  C   LEU    72      -2.557  56.032  35.695  1.00  0.00              
ATOM     32  O   LEU    72      -3.778  56.008  35.697  1.00  0.00              
ATOM     33  N   ILE    79      -1.311  64.791  27.361  1.00  0.00              
ATOM     34  CA  ILE    79       0.075  64.660  26.945  1.00  0.00              
ATOM     35  C   ILE    79       0.957  65.712  27.638  1.00  0.00              
ATOM     36  O   ILE    79       2.084  65.412  28.050  1.00  0.00              
ATOM     37  N   LEU    80       0.409  66.915  27.822  1.00  0.00              
ATOM     38  CA  LEU    80       1.138  67.995  28.465  1.00  0.00              
ATOM     39  C   LEU    80       1.470  67.724  29.920  1.00  0.00              
ATOM     40  O   LEU    80       2.543  68.097  30.393  1.00  0.00              
ATOM     41  N   TYR    81       0.542  67.092  30.637  1.00  0.00              
ATOM     42  CA  TYR    81       0.749  66.759  32.046  1.00  0.00              
ATOM     43  C   TYR    81       1.798  65.669  32.160  1.00  0.00              
ATOM     44  O   TYR    81       2.628  65.691  33.069  1.00  0.00              
ATOM     45  N   LEU    82       1.732  64.702  31.249  1.00  0.00              
ATOM     46  CA  LEU    82       2.669  63.588  31.241  1.00  0.00              
ATOM     47  C   LEU    82       4.076  64.047  30.920  1.00  0.00              
ATOM     48  O   LEU    82       5.033  63.600  31.544  1.00  0.00              
ATOM     49  N   ALA    83       4.199  64.939  29.945  1.00  0.00              
ATOM     50  CA  ALA    83       5.501  65.461  29.541  1.00  0.00              
ATOM     51  C   ALA    83       6.186  66.145  30.719  1.00  0.00              
ATOM     52  O   ALA    83       7.303  65.797  31.081  1.00  0.00              
ATOM     53  N   GLU    84       5.492  67.092  31.339  1.00  0.00              
ATOM     54  CA  GLU    84       6.032  67.808  32.484  1.00  0.00              
ATOM     55  C   GLU    84       6.470  66.903  33.625  1.00  0.00              
ATOM     56  O   GLU    84       7.562  67.083  34.160  1.00  0.00              
ATOM     57  N   ARG    85       5.615  65.953  34.006  1.00  0.00              
ATOM     58  CA  ARG    85       5.898  65.026  35.107  1.00  0.00              
ATOM     59  C   ARG    85       7.108  64.143  34.859  1.00  0.00              
ATOM     60  O   ARG    85       7.803  63.751  35.801  1.00  0.00              
ATOM     61  N   TYR    86       7.346  63.823  33.593  1.00  0.00              
ATOM     62  CA  TYR    86       8.472  62.990  33.192  1.00  0.00              
ATOM     63  C   TYR    86       9.683  63.858  32.813  1.00  0.00              
ATOM     64  O   TYR    86      10.821  63.390  32.806  1.00  0.00              
ATOM     65  N   GLY    87       9.431  65.135  32.540  1.00  0.00              
ATOM     66  CA  GLY    87      10.496  66.048  32.167  1.00  0.00              
ATOM     67  C   GLY    87      11.017  65.860  30.751  1.00  0.00              
ATOM     68  O   GLY    87      12.204  66.057  30.498  1.00  0.00              
ATOM     69  N   PHE    88      10.149  65.443  29.832  1.00  0.00              
ATOM     70  CA  PHE    88      10.540  65.247  28.430  1.00  0.00              
ATOM     71  C   PHE    88       9.587  66.014  27.519  1.00  0.00              
ATOM     72  O   PHE    88       8.624  66.628  27.989  1.00  0.00              
ATOM     73  N   SER    90       9.851  65.972  26.217  1.00  0.00              
ATOM     74  CA  SER    90       9.014  66.684  25.254  1.00  0.00              
ATOM     75  C   SER    90       7.672  66.001  25.010  1.00  0.00              
ATOM     76  O   SER    90       7.559  64.774  25.095  1.00  0.00              
ATOM     77  N   GLN    91       6.658  66.809  24.716  1.00  0.00              
ATOM     78  CA  GLN    91       5.328  66.291  24.436  1.00  0.00              
ATOM     79  C   GLN    91       5.427  65.377  23.229  1.00  0.00              
ATOM     80  O   GLN    91       4.720  64.377  23.120  1.00  0.00              
ATOM     81  N   GLN    92       6.347  65.724  22.341  1.00  0.00              
ATOM     82  CA  GLN    92       6.605  64.961  21.141  1.00  0.00              
ATOM     83  C   GLN    92       7.054  63.541  21.496  1.00  0.00              
ATOM     84  O   GLN    92       6.583  62.560  20.905  1.00  0.00              
ATOM     85  N   THR    93       7.954  63.442  22.472  1.00  0.00              
ATOM     86  CA  THR    93       8.466  62.150  22.912  1.00  0.00              
ATOM     87  C   THR    93       7.366  61.337  23.581  1.00  0.00              
ATOM     88  O   THR    93       7.249  60.129  23.347  1.00  0.00              
ATOM     89  N   LEU    94       6.568  62.004  24.413  1.00  0.00              
ATOM     90  CA  LEU    94       5.479  61.343  25.114  1.00  0.00              
ATOM     91  C   LEU    94       4.467  60.771  24.121  1.00  0.00              
ATOM     92  O   LEU    94       4.053  59.620  24.269  1.00  0.00              
ATOM     93  N   THR    95       4.126  61.537  23.081  1.00  0.00              
ATOM     94  CA  THR    95       3.174  61.087  22.047  1.00  0.00              
ATOM     95  C   THR    95       3.628  59.810  21.349  1.00  0.00              
ATOM     96  O   THR    95       2.802  58.979  20.977  1.00  0.00              
ATOM     97  N   ARG    96       4.938  59.681  21.139  1.00  0.00              
ATOM     98  CA  ARG    96       5.516  58.491  20.510  1.00  0.00              
ATOM     99  C   ARG    96       5.316  57.251  21.396  1.00  0.00              
ATOM    100  O   ARG    96       4.866  56.208  20.918  1.00  0.00              
ATOM    101  N   THR    97       5.660  57.375  22.680  1.00  0.00              
ATOM    102  CA  THR    97       5.516  56.282  23.632  1.00  0.00              
ATOM    103  C   THR    97       4.061  55.876  23.800  1.00  0.00              
ATOM    104  O   THR    97       3.756  54.688  23.909  1.00  0.00              
ATOM    105  N   PHE    98       3.170  56.867  23.832  1.00  0.00              
ATOM    106  CA  PHE    98       1.734  56.611  23.991  1.00  0.00              
ATOM    107  C   PHE    98       1.164  55.900  22.776  1.00  0.00              
ATOM    108  O   PHE    98       0.252  55.084  22.895  1.00  0.00              
ATOM    109  N   LYS    99       1.723  56.221  21.611  1.00  0.00              
ATOM    110  CA  LYS    99       1.323  55.617  20.347  1.00  0.00              
ATOM    111  C   LYS    99       1.556  54.117  20.470  1.00  0.00              
ATOM    112  O   LYS    99       0.683  53.306  20.162  1.00  0.00              
ATOM    113  N   ASN   100       2.732  53.768  20.982  1.00  0.00              
ATOM    114  CA  ASN   100       3.112  52.381  21.179  1.00  0.00              
ATOM    115  C   ASN   100       2.202  51.669  22.185  1.00  0.00              
ATOM    116  O   ASN   100       1.779  50.543  21.944  1.00  0.00              
ATOM    117  N   TYR   101       1.896  52.334  23.298  1.00  0.00              
ATOM    118  CA  TYR   101       1.032  51.773  24.342  1.00  0.00              
ATOM    119  C   TYR   101      -0.423  51.625  23.882  1.00  0.00              
ATOM    120  O   TYR   101      -1.143  50.741  24.350  1.00  0.00              
ATOM    121  N   PHE   102      -0.853  52.504  22.981  1.00  0.00              
ATOM    122  CA  PHE   102      -2.216  52.469  22.461  1.00  0.00              
ATOM    123  C   PHE   102      -2.369  51.177  21.669  1.00  0.00              
ATOM    124  O   PHE   102      -3.287  50.397  21.907  1.00  0.00              
ATOM    125  N   ASP   103      -1.415  50.906  20.788  1.00  0.00              
ATOM    126  CA  ASP   103      -1.476  49.701  19.969  1.00  0.00              
ATOM    127  C   ASP   103      -1.307  48.401  20.742  1.00  0.00              
ATOM    128  O   ASP   103      -1.875  47.375  20.366  1.00  0.00              
ATOM    129  N   VAL   104      -0.555  48.450  21.838  1.00  0.00              
ATOM    130  CA  VAL   104      -0.343  47.273  22.678  1.00  0.00              
ATOM    131  C   VAL   104      -1.544  47.053  23.582  1.00  0.00              
ATOM    132  O   VAL   104      -1.569  46.123  24.390  1.00  0.00              
ATOM    133  N   PRO   105      -2.545  47.914  23.425  1.00  0.00              
ATOM    134  CA  PRO   105      -3.762  47.858  24.217  1.00  0.00              
ATOM    135  C   PRO   105      -3.509  48.027  25.712  1.00  0.00              
ATOM    136  O   PRO   105      -4.169  47.393  26.539  1.00  0.00              
ATOM    137  N   PRO   106      -2.546  48.881  26.050  1.00  0.00              
ATOM    138  CA  PRO   106      -2.220  49.170  27.444  1.00  0.00              
ATOM    139  C   PRO   106      -2.891  50.463  27.898  1.00  0.00              
ATOM    140  O   PRO   106      -3.186  50.637  29.084  1.00  0.00              
ATOM    141  N   HIS   107      -3.071  51.395  26.966  1.00  0.00              
ATOM    142  CA  HIS   107      -3.750  52.651  27.280  1.00  0.00              
ATOM    143  C   HIS   107      -4.834  52.951  26.258  1.00  0.00              
ATOM    144  O   HIS   107      -4.886  52.343  25.198  1.00  0.00              
ATOM    145  N   TYR   109      -5.564  60.594  28.520  1.00  0.00              
ATOM    146  CA  TYR   109      -5.162  59.197  28.424  1.00  0.00              
ATOM    147  C   TYR   109      -5.341  58.494  29.749  1.00  0.00              
ATOM    148  O   TYR   109      -5.188  59.098  30.809  1.00  0.00              
ATOM    149  N   ARG   110      -5.625  57.202  29.686  1.00  0.00              
ATOM    150  CA  ARG   110      -5.823  56.402  30.885  1.00  0.00              
ATOM    151  C   ARG   110      -5.452  54.953  30.596  1.00  0.00              
ATOM    152  O   ARG   110      -5.291  54.572  29.434  1.00  0.00              
ATOM    153  N   MET   111      -5.302  54.147  31.644  1.00  0.00              
ATOM    154  CA  MET   111      -4.974  52.742  31.449  1.00  0.00              
ATOM    155  C   MET   111      -6.160  52.051  30.778  1.00  0.00              
ATOM    156  O   MET   111      -7.305  52.451  30.962  1.00  0.00              
ATOM    157  N   THR   112      -5.873  51.035  29.972  1.00  0.00              
ATOM    158  CA  THR   112      -6.890  50.289  29.235  1.00  0.00              
ATOM    159  C   THR   112      -8.027  49.735  30.100  1.00  0.00              
ATOM    160  O   THR   112      -9.196  49.848  29.735  1.00  0.00              
ATOM    161  N   ASN   113      -7.682  49.118  31.227  1.00  0.00              
ATOM    162  CA  ASN   113      -8.683  48.555  32.134  1.00  0.00              
ATOM    163  C   ASN   113      -8.200  48.511  33.575  1.00  0.00              
ATOM    164  O   ASN   113      -7.096  48.955  33.886  1.00  0.00              
ATOM    165  N   MET   114      -9.028  47.974  34.457  1.00  0.00              
ATOM    166  CA  MET   114      -8.660  47.922  35.855  1.00  0.00              
ATOM    167  C   MET   114      -7.620  46.842  36.123  1.00  0.00              
ATOM    168  O   MET   114      -6.857  46.953  37.076  1.00  0.00              
ATOM    169  N   GLN   115      -7.574  45.816  35.274  1.00  0.00              
ATOM    170  CA  GLN   115      -6.608  44.729  35.440  1.00  0.00              
ATOM    171  C   GLN   115      -5.190  45.261  35.400  1.00  0.00              
ATOM    172  O   GLN   115      -4.350  44.854  36.194  1.00  0.00              
ATOM    173  N   GLY   116      -4.936  46.179  34.479  1.00  0.00              
ATOM    174  CA  GLY   116      -3.622  46.777  34.362  1.00  0.00              
ATOM    175  C   GLY   116      -3.288  47.473  35.669  1.00  0.00              
ATOM    176  O   GLY   116      -2.174  47.356  36.166  1.00  0.00              
ATOM    177  N   GLU   117      -4.259  48.188  36.232  1.00  0.00              
ATOM    178  CA  GLU   117      -4.043  48.894  37.492  1.00  0.00              
ATOM    179  C   GLU   117      -3.732  47.885  38.588  1.00  0.00              
ATOM    180  O   GLU   117      -2.766  48.045  39.334  1.00  0.00              
ATOM    181  N   SER   118      -4.546  46.835  38.656  1.00  0.00              
ATOM    182  CA  SER   118      -4.385  45.795  39.661  1.00  0.00              
ATOM    183  C   SER   118      -3.067  45.032  39.561  1.00  0.00              
ATOM    184  O   SER   118      -2.423  44.803  40.583  1.00  0.00              
ATOM    185  N   ARG   119      -2.654  44.649  38.351  1.00  0.00              
ATOM    186  CA  ARG   119      -1.403  43.903  38.206  1.00  0.00              
ATOM    187  C   ARG   119      -0.205  44.792  38.508  1.00  0.00              
ATOM    188  O   ARG   119       0.773  44.342  39.085  1.00  0.00              
ATOM    189  N   PHE   120      -0.319  46.072  38.181  1.00  0.00              
ATOM    190  CA  PHE   120       0.740  47.026  38.467  1.00  0.00              
ATOM    191  C   PHE   120       0.916  47.194  39.996  1.00  0.00              
ATOM    192  O   PHE   120       2.043  47.149  40.507  1.00  0.00              
ATOM    193  N   LEU   121      -0.185  47.402  40.718  1.00  0.00              
ATOM    194  CA  LEU   121      -0.120  47.560  42.168  1.00  0.00              
ATOM    195  C   LEU   121       0.423  46.316  42.865  1.00  0.00              
ATOM    196  O   LEU   121       1.274  46.425  43.748  1.00  0.00              
ATOM    197  N   HIS   122      -0.074  45.141  42.471  1.00  0.00              
ATOM    198  CA  HIS   122       0.362  43.866  43.055  1.00  0.00              
ATOM    199  C   HIS   122       1.832  43.525  42.820  1.00  0.00              
ATOM    200  O   HIS   122       2.480  42.941  43.694  1.00  0.00              
ATOM    201  N   PRO   123       2.337  43.859  41.631  1.00  0.00              
ATOM    202  CA  PRO   123       3.735  43.612  41.284  1.00  0.00              
ATOM    203  C   PRO   123       4.615  44.458  42.215  1.00  0.00              
ATOM    204  O   PRO   123       5.609  43.982  42.776  1.00  0.00              
END
