REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0080AL215_1_4 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : ZHU-JUN 
REMARK  ---------------------------------------------------------- 
TARGET     T0080  
AUTHOR     4070-8855-4894  
METHOD     The target is compared with PDB25 database (U.Hobohm et al., 1992).  
METHOD     For each structure in PDB25, a model is built in the following way:  
METHOD     the sequence (query) is compared with NR database using transitive   
METHOD     BLAST (Neuwald et al. 1997). Similar sequences are collected and   
METHOD     purged at score 150.  Those sequences are aligned with query   
METHOD     sequence using Bayesian aligner (Zhu et al., 1998) and a   
METHOD     profile-like model is built (Lawrence et al. 1993; Gribskov et al.,  
METHOD     1987; unpublished result by Jun Zhu, Roland Luthy and Charlse E.   
METHOD     Lawrence).  Then, the target file is compared with the models   
METHOD     derived from PDB25.  
MODEL     1  
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1bcp_B 
ATOM      1  N   PRO   254     -13.085  29.264  -6.951  1.00  0.00              
ATOM      2  CA  PRO   254     -12.110  30.162  -6.364  1.00  0.00              
ATOM      3  C   PRO   254     -11.282  30.873  -7.436  1.00  0.00              
ATOM      4  O   PRO   254     -11.263  32.099  -7.468  1.00  0.00              
ATOM      5  N   ALA   255     -10.615  30.113  -8.306  1.00  0.00              
ATOM      6  CA  ALA   255      -9.774  30.715  -9.338  1.00  0.00              
ATOM      7  C   ALA   255     -10.519  31.324 -10.536  1.00  0.00              
ATOM      8  O   ALA   255      -9.899  31.933 -11.415  1.00  0.00              
ATOM      9  N   VAL   256     -11.836  31.174 -10.572  1.00  0.00              
ATOM     10  CA  VAL   256     -12.615  31.699 -11.669  1.00  0.00              
ATOM     11  C   VAL   256     -13.457  32.913 -11.281  1.00  0.00              
ATOM     12  O   VAL   256     -13.828  33.708 -12.145  1.00  0.00              
ATOM     13  N   VAL   257     -13.796  33.041 -10.004  1.00  0.00              
ATOM     14  CA  VAL   257     -14.588  34.177  -9.566  1.00  0.00              
ATOM     15  C   VAL   257     -16.058  33.955  -9.805  1.00  0.00              
ATOM     16  O   VAL   257     -16.825  34.906  -9.878  1.00  0.00              
ATOM     17  N   ALA   258     -16.423  32.682  -9.904  1.00  0.00              
ATOM     18  CA  ALA   258     -17.770  32.206 -10.158  1.00  0.00              
ATOM     19  C   ALA   258     -18.745  32.457  -8.991  1.00  0.00              
ATOM     20  O   ALA   258     -18.714  31.764  -7.988  1.00  0.00              
ATOM     21  N   ALA   259     -19.640  33.423  -9.139  1.00  0.00              
ATOM     22  CA  ALA   259     -20.584  33.729  -8.083  1.00  0.00              
ATOM     23  C   ALA   259     -21.483  32.525  -7.819  1.00  0.00              
ATOM     24  O   ALA   259     -22.468  32.329  -8.492  1.00  0.00              
ATOM     25  N   ALA   260     -21.185  31.747  -6.805  1.00  0.00              
ATOM     26  CA  ALA   260     -21.967  30.559  -6.511  1.00  0.00              
ATOM     27  C   ALA   260     -23.082  30.796  -5.465  1.00  0.00              
ATOM     28  O   ALA   260     -23.491  31.932  -5.231  1.00  0.00              
ATOM     29  N   ARG   261     -23.647  29.714  -4.922  1.00  0.00              
ATOM     30  CA  ARG   261     -24.671  29.721  -3.859  1.00  0.00              
ATOM     31  C   ARG   261     -24.205  28.579  -2.983  1.00  0.00              
ATOM     32  O   ARG   261     -24.301  27.422  -3.370  1.00  0.00              
ATOM     33  N   VAL   262     -23.686  28.912  -1.805  1.00  0.00              
ATOM     34  CA  VAL   262     -23.113  27.928  -0.900  1.00  0.00              
ATOM     35  C   VAL   262     -24.061  27.357   0.121  1.00  0.00              
ATOM     36  O   VAL   262     -24.943  28.034   0.583  1.00  0.00              
ATOM     37  N   GLY   263     -23.900  26.086   0.427  1.00  0.00              
ATOM     38  CA  GLY   263     -24.736  25.418   1.413  1.00  0.00              
ATOM     39  C   GLY   263     -23.822  24.946   2.586  1.00  0.00              
ATOM     40  O   GLY   263     -22.775  24.306   2.368  1.00  0.00              
ATOM     41  N   VAL   264     -24.217  25.248   3.822  1.00  0.00              
ATOM     42  CA  VAL   264     -23.466  24.866   5.045  1.00  0.00              
ATOM     43  C   VAL   264     -24.390  24.154   6.075  1.00  0.00              
ATOM     44  O   VAL   264     -25.592  24.436   6.148  1.00  0.00              
ATOM     45  N   GLY   265     -23.837  23.204   6.824  1.00  0.00              
ATOM     46  CA  GLY   265     -24.571  22.477   7.883  1.00  0.00              
ATOM     47  C   GLY   265     -24.043  22.975   9.220  1.00  0.00              
ATOM     48  O   GLY   265     -22.908  22.622   9.588  1.00  0.00              
ATOM     49  N   HIS   266     -24.856  23.730   9.974  1.00  0.00              
ATOM     50  CA  HIS   266     -24.417  24.264  11.280  1.00  0.00              
ATOM     51  C   HIS   266     -24.172  23.229  12.373  1.00  0.00              
ATOM     52  O   HIS   266     -23.945  23.597  13.504  1.00  0.00              
ATOM     53  N   ALA   267     -24.159  21.944  12.016  1.00  0.00              
ATOM     54  CA  ALA   267     -23.889  20.872  12.958  1.00  0.00              
ATOM     55  C   ALA   267     -22.521  21.007  13.605  1.00  0.00              
ATOM     56  O   ALA   267     -22.296  20.413  14.641  1.00  0.00              
END
