PFRMAT SS 
TARGET T0080 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t80.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 3.60751 
METHOD 
MODEL 1 
K C 0.91 
G C 0.90 
H C 0.72 
L C 0.56 
T C 0.49 
R E 0.42 
L C 0.53 
G C 0.69 
L C 0.46 
E H 0.40 
F C 0.47 
F C 0.53 
D C 0.45 
Q H 0.51 
P H 0.57 
A H 0.90 
V H 0.96 
P H 0.99 
L H 0.99 
A H 0.99 
R H 0.99 
A H 0.99 
F H 0.97 
L H 0.93 
G H 0.85 
Q H 0.84 
V H 0.76 
L H 0.68 
V H 0.61 
R H 0.53 
R C 0.43 
L C 0.69 
P C 0.86 
N C 0.88 
G C 0.91 
T C 0.72 
E E 0.71 
L E 0.91 
R E 0.95 
G E 0.96 
R E 0.95 
I E 0.96 
V E 0.94 
E E 0.95 
T E 0.94 
E E 0.94 
A E 0.93 
Y E 0.86 
L E 0.57 
G C 0.86 
P C 0.91 
E C 0.78 
D C 0.49 
E H 0.61 
A H 0.55 
A H 0.47 
H C 0.48 
S C 0.65 
R C 0.71 
G C 0.85 
G C 0.90 
R C 0.76 
Q C 0.74 
T C 0.89 
P C 0.84 
R C 0.75 
N C 0.67 
R C 0.50 
G E 0.55 
M E 0.63 
F E 0.54 
M C 0.64 
K C 0.84 
P C 0.90 
G C 0.83 
T C 0.50 
L E 0.78 
Y E 0.90 
V E 0.90 
Y E 0.88 
I E 0.83 
I E 0.63 
Y C 0.50 
G C 0.75 
M C 0.55 
Y E 0.72 
F E 0.86 
C E 0.93 
M E 0.89 
N E 0.83 
I E 0.78 
S E 0.63 
S C 0.58 
Q C 0.86 
G C 0.91 
D C 0.94 
G C 0.89 
A E 0.51 
C E 0.88 
V E 0.95 
L E 0.96 
L E 0.91 
R E 0.78 
A E 0.48 
L C 0.66 
E C 0.86 
P C 0.66 
L C 0.52 
E C 0.70 
G C 0.62 
L H 0.73 
E H 0.86 
T H 0.81 
M H 0.90 
R H 0.94 
Q H 0.92 
L H 0.82 
R H 0.77 
S H 0.70 
T H 0.67 
L H 0.60 
R H 0.48 
K C 0.58 
G C 0.81 
T C 0.80 
A C 0.72 
S C 0.66 
R C 0.58 
V C 0.54 
L C 0.58 
K C 0.65 
D C 0.44 
R H 0.55 
E H 0.60 
L H 0.53 
C C 0.50 
S C 0.84 
G C 0.95 
P C 0.77 
S H 0.71 
K H 0.75 
L H 0.86 
C H 0.91 
Q H 0.91 
A H 0.82 
L H 0.60 
A C 0.57 
I C 0.57 
N C 0.70 
K C 0.71 
S C 0.66 
F C 0.74 
D C 0.87 
Q C 0.64 
R C 0.51 
D C 0.46 
L H 0.43 
A C 0.51 
Q C 0.64 
D C 0.87 
E C 0.86 
A C 0.60 
V E 0.66 
W E 0.76 
L E 0.72 
E E 0.54 
R C 0.71 
G C 0.92 
P C 0.86 
L C 0.72 
E C 0.78 
P C 0.86 
S C 0.91 
E C 0.87 
P C 0.80 
A C 0.53 
V E 0.68 
V E 0.77 
A E 0.65 
A C 0.64 
A C 0.66 
R C 0.50 
V C 0.53 
G C 0.59 
V C 0.62 
G C 0.68 
H C 0.71 
A C 0.65 
G H 0.62 
E H 0.77 
W H 0.61 
A C 0.59 
R C 0.76 
K C 0.89 
P C 0.86 
L E 0.69 
R E 0.94 
F E 0.97 
Y E 0.96 
V E 0.87 
R E 0.52 
G C 0.79 
S C 0.94 
P C 0.89 
W C 0.49 
V E 0.61 
S E 0.62 
V E 0.54 
V H 0.37 
D H 0.59 
R H 0.72 
V H 0.74 
A H 0.79 
E H 0.77 
Q H 0.66 
D C 0.54 
T C 0.68 
Q C 0.70 
A C 0.77 
END 
