REMARK  ---------------------------------------------------------- 
REMARK  Molecule : T0084AL076_1 
REMARK  Alignment model prepared for CASP3 experiment 
REMARK  by group : BASS-MICHAEL 
REMARK  ---------------------------------------------------------- 
TARGET T0084  
AUTHOR 6795-8227-6214  
REMARK CASP3 Prediction by Michael Bass on 9/10/98  
METHOD AmgenThread.  Gapped alignments with no end penalties.  
METHOD Uses residue-based statistical potentials.  Specific  
METHOD potentials include exposed surface area, inter-residue  
METHOD distance-dependent contacts, and backbone dihedral  
METHOD angle preferences.  The search database is against the  
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or  
METHOD less level containing 1,247 structures.  
METHOD This is an automatic prediction method.  
REMARK Results from database search:  
REMARK Sequence "t0084" has a significant match  
REMARK pdb1gcm_A     5.187     0.293    10.901  MOLECULE: GCN4P-II;  
REMARK                                          SCOP: Alpha; Oligomers of long helices  
REMARK pdb1wfb_A     5.158     0.292     6.179  ANTIFREEZE PROTEIN ISOFORM HPLC6 (-180 DEGREES C)  
REMARK                                          SCOP: Peptides; Antifreeze polypeptide HPLC-6  
REMARK pdb1aik_N     5.061     0.287    11.040  MOLECULE: HIV-1 GP41 GLYCOPROTEIN;  
REMARK                                          SCOP: Membrane; stalk segment of viral fusion proteins  
REMARK pdb1hst_A     4.646     0.268    12.943  HISTONE H5 (GLOBULAR DOMAIN)  
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle  
REMARK pdb125d       4.535     0.263     8.349  CD2-GAL4 (65-RESIDUE DNA-BINDING DOMAIN) (YEAST)  
REMARK                                          SCOP: Small; Zn2/Cys6 DNA-binding domain  
REMARK pdb1kzu_B     4.530     0.263     8.744  MOLECULE: LIGHT HARVESTING PROTEIN B-800/850;  
REMARK                                          SCOP: Membrane; Light-harvesting complex LH2  
REMARK pdb1aap_A     4.330     0.254     8.443  PROTEASE INHIBITOR DOMAIN OF ALZHEIMER'S AMYLOID  
REMARK                                          SCOP: Small; BPTI-like  
REMARK pdb1ery       4.318     0.253     5.870  MOLECULE: PHEROMONE ER-11;  
REMARK pdb1aik_C     4.248     0.250     8.856  MOLECULE: HIV-1 GP41 GLYCOPROTEIN;  
REMARK pdb1r69       4.083     0.243     8.769  434 REPRESSOR (AMINO-TERMINAL DOMAIN) (R1-69)  
REMARK                                          SCOP: Alpha; lambda repressor-like DNA-binding domains  
REMARK pdb1jun_A     3.895     0.234     9.207  MOLECULE: C-JUN HOMODIMER;  
REMARK pdb1yrn_A     3.882     0.234     6.580  MOLECULE: MATING-TYPE PROTEIN A-1;  
MODEL  1  
REMARK Sequence alignment follows:  
REMARK t0084        CGGREGVLKKLRAVENELHYNKSLLEEVKDELQKMRQ...  
REMARK                      |:.. .: ::   .. :|:.:..::::::     
REMARK pdb1gcm_A    ........XRMKQIEDKIEEILSKIYHIENEIARIKKLIG  
REMARK   
REMARK  ---------------------------------------------------------- 
REMARK  AL2TS service [v. 08/06/1998]: Adam Zemla, adamz@llnl.gov 
REMARK  ---------------------------------------------------------- 
REMARK  Coordinates assigned from PDB entry: 1gcm_A 
ATOM      1  N   LYS    10      12.994   6.672  -8.752  1.00  0.00              
ATOM      2  CA  LYS    10      13.798   5.725  -8.026  1.00  0.00              
ATOM      3  C   LYS    10      15.256   5.620  -8.418  1.00  0.00              
ATOM      4  O   LYS    10      16.122   5.720  -7.571  1.00  0.00              
ATOM      5  N   LEU    11      15.546   5.313  -9.658  1.00  0.00              
ATOM      6  CA  LEU    11      16.922   5.060 -10.020  1.00  0.00              
ATOM      7  C   LEU    11      17.877   6.169  -9.647  1.00  0.00              
ATOM      8  O   LEU    11      19.050   5.970  -9.310  1.00  0.00              
ATOM      9  N   ARG    12      17.289   7.345  -9.648  1.00  0.00              
ATOM     10  CA  ARG    12      18.002   8.564  -9.359  1.00  0.00              
ATOM     11  C   ARG    12      18.396   8.618  -7.895  1.00  0.00              
ATOM     12  O   ARG    12      19.530   8.874  -7.543  1.00  0.00              
ATOM     13  N   ALA    13      17.451   8.369  -7.014  1.00  0.00              
ATOM     14  CA  ALA    13      17.781   8.360  -5.616  1.00  0.00              
ATOM     15  C   ALA    13      18.798   7.249  -5.387  1.00  0.00              
ATOM     16  O   ALA    13      19.785   7.426  -4.700  1.00  0.00              
ATOM     17  N   VAL    14      18.565   6.101  -6.002  1.00  0.00              
ATOM     18  CA  VAL    14      19.451   4.969  -5.841  1.00  0.00              
ATOM     19  C   VAL    14      20.904   5.338  -6.075  1.00  0.00              
ATOM     20  O   VAL    14      21.756   5.117  -5.239  1.00  0.00              
ATOM     21  N   GLU    15      21.152   6.070  -7.136  1.00  0.00              
ATOM     22  CA  GLU    15      22.494   6.452  -7.431  1.00  0.00              
ATOM     23  C   GLU    15      22.994   7.410  -6.412  1.00  0.00              
ATOM     24  O   GLU    15      24.161   7.425  -6.063  1.00  0.00              
ATOM     25  N   ASN    16      22.087   8.245  -5.982  1.00  0.00              
ATOM     26  CA  ASN    16      22.502   9.265  -5.047  1.00  0.00              
ATOM     27  C   ASN    16      22.963   8.632  -3.738  1.00  0.00              
ATOM     28  O   ASN    16      23.946   9.089  -3.167  1.00  0.00              
ATOM     29  N   GLU    17      22.169   7.637  -3.266  1.00  0.00              
ATOM     30  CA  GLU    17      22.376   6.810  -2.089  1.00  0.00              
ATOM     31  C   GLU    17      23.645   5.997  -2.263  1.00  0.00              
ATOM     32  O   GLU    17      24.409   5.795  -1.346  1.00  0.00              
ATOM     33  N   LEU    18      23.955   5.615  -3.487  1.00  0.00              
ATOM     34  CA  LEU    18      25.213   4.958  -3.716  1.00  0.00              
ATOM     35  C   LEU    18      26.415   5.874  -3.486  1.00  0.00              
ATOM     36  O   LEU    18      27.395   5.422  -2.923  1.00  0.00              
ATOM     37  N   HIS    19      26.367   7.137  -3.933  1.00  0.00              
ATOM     38  CA  HIS    19      27.466   8.103  -3.777  1.00  0.00              
ATOM     39  C   HIS    19      27.702   8.329  -2.275  1.00  0.00              
ATOM     40  O   HIS    19      28.825   8.404  -1.801  1.00  0.00              
ATOM     41  N   TYR    20      26.609   8.354  -1.511  1.00  0.00              
ATOM     42  CA  TYR    20      26.619   8.533  -0.067  1.00  0.00              
ATOM     43  C   TYR    20      27.366   7.389   0.603  1.00  0.00              
ATOM     44  O   TYR    20      28.169   7.562   1.496  1.00  0.00              
ATOM     45  N   ASN    21      27.151   6.205   0.092  1.00  0.00              
ATOM     46  CA  ASN    21      27.676   4.981   0.639  1.00  0.00              
ATOM     47  C   ASN    21      29.142   4.869   0.445  1.00  0.00              
ATOM     48  O   ASN    21      29.916   4.297   1.216  1.00  0.00              
ATOM     49  N   LYS    22      29.489   5.370  -0.671  1.00  0.00              
ATOM     50  CA  LYS    22      30.844   5.281  -1.085  1.00  0.00              
ATOM     51  C   LYS    22      31.674   6.118  -0.133  1.00  0.00              
ATOM     52  O   LYS    22      32.790   5.802   0.246  1.00  0.00              
ATOM     53  N   SER    23      31.123   7.246   0.236  1.00  0.00              
ATOM     54  CA  SER    23      31.813   8.161   1.150  1.00  0.00              
ATOM     55  C   SER    23      31.920   7.620   2.555  1.00  0.00              
ATOM     56  O   SER    23      32.871   7.989   3.264  1.00  0.00              
ATOM     57  N   LEU    24      30.882   6.871   2.968  1.00  0.00              
ATOM     58  CA  LEU    24      30.750   6.215   4.287  1.00  0.00              
ATOM     59  C   LEU    24      31.864   5.175   4.498  1.00  0.00              
ATOM     60  O   LEU    24      32.713   5.173   5.385  1.00  0.00              
ATOM     61  N   LEU    25      31.993   4.370   3.502  1.00  0.00              
ATOM     62  CA  LEU    25      33.064   3.416   3.376  1.00  0.00              
ATOM     63  C   LEU    25      34.452   4.042   3.472  1.00  0.00              
ATOM     64  O   LEU    25      35.373   3.505   4.111  1.00  0.00              
ATOM     65  N   GLU    26      34.681   5.093   2.694  1.00  0.00              
ATOM     66  CA  GLU    26      36.036   5.678   2.610  1.00  0.00              
ATOM     67  C   GLU    26      36.447   6.236   3.988  1.00  0.00              
ATOM     68  O   GLU    26      37.560   6.056   4.434  1.00  0.00              
ATOM     69  N   GLU    27      35.465   6.715   4.752  1.00  0.00              
ATOM     70  CA  GLU    27      35.693   7.149   6.093  1.00  0.00              
ATOM     71  C   GLU    27      36.142   5.966   6.978  1.00  0.00              
ATOM     72  O   GLU    27      37.102   5.995   7.722  1.00  0.00              
ATOM     73  N   VAL    28      35.366   4.912   6.989  1.00  0.00              
ATOM     74  CA  VAL    28      35.628   3.682   7.746  1.00  0.00              
ATOM     75  C   VAL    28      37.000   3.096   7.468  1.00  0.00              
ATOM     76  O   VAL    28      37.654   2.500   8.318  1.00  0.00              
ATOM     77  N   LYS    29      37.437   3.197   6.230  1.00  0.00              
ATOM     78  CA  LYS    29      38.754   2.679   5.921  1.00  0.00              
ATOM     79  C   LYS    29      39.818   3.561   6.529  1.00  0.00              
ATOM     80  O   LYS    29      40.922   3.146   6.811  1.00  0.00              
ATOM     81  N   ASP    30      39.444   4.775   6.837  1.00  0.00              
ATOM     82  CA  ASP    30      40.399   5.666   7.387  1.00  0.00              
ATOM     83  C   ASP    30      40.531   5.417   8.859  1.00  0.00              
ATOM     84  O   ASP    30      41.656   5.500   9.351  1.00  0.00              
ATOM     85  N   GLU    31      39.385   5.097   9.522  1.00  0.00              
ATOM     86  CA  GLU    31      39.305   4.747  10.953  1.00  0.00              
ATOM     87  C   GLU    31      40.165   3.515  11.237  1.00  0.00              
ATOM     88  O   GLU    31      41.040   3.492  12.099  1.00  0.00              
ATOM     89  N   LEU    32      39.962   2.538  10.383  1.00  0.00              
ATOM     90  CA  LEU    32      40.672   1.310  10.379  1.00  0.00              
ATOM     91  C   LEU    32      42.155   1.550  10.190  1.00  0.00              
ATOM     92  O   LEU    32      42.978   0.983  10.913  1.00  0.00              
ATOM     93  N   GLN    33      42.531   2.333   9.188  1.00  0.00              
ATOM     94  CA  GLN    33      43.955   2.525   8.934  1.00  0.00              
ATOM     95  C   GLN    33      44.677   3.079  10.162  1.00  0.00              
ATOM     96  O   GLN    33      45.764   2.654  10.552  1.00  0.00              
ATOM     97  N   LYS    34      43.963   3.948  10.838  1.00  0.00              
ATOM     98  CA  LYS    34      44.389   4.638  12.024  1.00  0.00              
ATOM     99  C   LYS    34      44.586   3.656  13.179  1.00  0.00              
ATOM    100  O   LYS    34      45.631   3.543  13.839  1.00  0.00              
ATOM    101  N   MET    35      43.515   2.921  13.416  1.00  0.00              
ATOM    102  CA  MET    35      43.440   1.945  14.496  1.00  0.00              
ATOM    103  C   MET    35      44.547   0.941  14.342  1.00  0.00              
ATOM    104  O   MET    35      45.044   0.350  15.279  1.00  0.00              
ATOM    105  N   ARG    36      44.969   0.759  13.121  1.00  0.00              
ATOM    106  CA  ARG    36      45.985  -0.210  12.949  1.00  0.00              
ATOM    107  C   ARG    36      47.328   0.291  13.418  1.00  0.00              
ATOM    108  O   ARG    36      48.199  -0.499  13.774  1.00  0.00              
ATOM    109  N   GLN    37      47.497   1.606  13.376  1.00  0.00              
ATOM    110  CA  GLN    37      48.747   2.212  13.789  1.00  0.00              
ATOM    111  C   GLN    37      48.829   2.182  15.306  1.00  0.00              
ATOM    112  O   GLN    37      49.879   1.958  15.904  1.00  0.00              
END
