PFRMAT SS 
TARGET T0084 
AUTHOR 1751-3146-3362 
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net 
METHOD This is a 4-layer network, with  
METHOD	window	units 
METHOD	    9	    6 
METHOD	   11	    9 
METHOD	    3	    8 
METHOD	    7	    3 (1 EHL ) 
METHOD The input amino acid frequencies were determined from 
METHOD alignment t84.t98_6.a2m.gz 
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5) 
METHOD The weighting was determined by the posterior distribution 
METHOD after regularizing with recode3.20comp. 
METHOD Counts were regularized to probabilities using 
METHOD /projects/compbio/lib/recode3.20comp 
METHOD Total sequence weight for alignment was 3.80571 
METHOD 
MODEL 1 
C C 0.82 
G C 0.87 
G C 0.87 
R H 0.49 
E H 0.67 
G H 0.64 
V H 0.74 
L H 0.78 
K H 0.62 
K C 0.51 
L H 0.49 
R C 0.39 
A E 0.38 
V C 0.37 
E C 0.46 
N H 0.46 
E H 0.53 
L H 0.50 
H C 0.54 
Y C 0.63 
N C 0.65 
K C 0.56 
S C 0.58 
L H 0.45 
L H 0.72 
E H 0.87 
E H 0.89 
V H 0.91 
K H 0.94 
D H 0.95 
E H 0.94 
L H 0.94 
Q H 0.93 
K H 0.84 
M H 0.62 
R C 0.48 
Q C 0.63 
END 
