PFRMAT SS 
TARGET T0084 
AUTHOR 3403-1625-5531 
METHOD New Joint Method including SSthread 
METHOD (Prediction of protein Secondary Structure using Threading) 
METHOD K. Nishikawa and T. Noguchi:  
METHOD Methods in Enzymology, Vol.202, pp.31-44 (1991).  
METHOD M. Ito, Y. Matsuo and K. Nishikawa:  
METHOD Comput. Appl. Biosci. Vol.13, pp.415-423 (1997). 
MODEL  2 
C C 1.0 
G C 1.0 
G C 1.0 
R C 1.0 
E C 0.6 
G C 0.6 
V H 1.0 
L H 1.0 
K H 0.8 
K H 0.8 
L H 1.0 
R H 0.8 
A H 0.8 
V H 0.8 
E H 0.8 
N H 0.8 
E H 0.8 
L H 0.8 
H C 0.6 
Y C 0.6 
N C 0.6 
K H 0.6 
S H 0.6 
L H 1.0 
L H 1.0 
E H 1.0 
E H 1.0 
V H 1.0 
K H 1.0 
D H 1.0 
E H 1.0 
L H 1.0 
Q H 1.0 
K H 1.0 
M H 1.0 
R H 0.8 
Q C 0.6 
END 
