PFRMAT AL                                                               
TARGET T0085                                                            
REMARK ================================================================ 
AUTHOR 5601-8785-5692                                                   
REMARK Ralf Thiele, GMD,                                                
REMARK Ralf Zimmer, GMD,                                                
REMARK Theo Mevissen, GMD,                                              
REMARK Jochen Selbig, GMD,                                              
REMARK German National Research Center for Information Technology       
REMARK Institute for Algorithms and Scientific Computing                
REMARK ================================================================ 
METHOD A reduced candidate list is produced via ToPLign [1]             
METHOD sequence/profile alignments, 123D [2] and RDP [3].               
METHOD The top scoring candidates from this list and the                
METHOD corresponding refined alignments have been produced              
METHOD with RDP [3] using newly derived modifications of                
METHOD contact capacity [2] and pair interaction potentials.            
METHOD References:                                                      
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer: 
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign", 
METHOD     GMD, 1994-98.                                                
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:           
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment  
METHOD     and Contact Capacity Potentials",                            
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publ. Co.,  
METHOD     1996, 53--72.                                                
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:             
METHOD     "Recursive Dynamic Programming for Adaptive Sequence         
METHOD     and Structure Alignment",                                    
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.    
REMARK ================================================================ 
MODEL  1                                                                
PARENT NONE 
TER                                                                     
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