PFRMAT SS 
TARGET T0085 
AUTHOR 7936-3040-4355 
REMARK ---------------------------- 
METHOD Secondary structure prediction by bootstrapping a multiple 
METHOD sequence alignment (using a home-grown multiple sequence 
METHOD alignment method involving intermediate sequences) and getting 
METHOD a prediction from three different methods and taking the consensus. 
REMARK ---------------------------- 
MODEL 1 
A C 1.0 
D C 1.0 
A C 1.0 
P C 1.0 
F C 1.0 
E C 1.0 
G C 1.0 
R C 1.0 
K C 1.0 
K C 1.0 
C C 1.0 
S C 1.0 
S H 0.7 
C H 0.7 
H H 0.7 
K H 0.7 
A H 0.7 
Q H 0.7 
A H 0.7 
Q H 1.0 
S H 1.0 
W H 1.0 
K H 1.0 
D H 1.0 
T H 1.0 
A H 1.0 
H H 1.0 
A H 1.0 
K H 1.0 
A H 1.0 
M H 1.0 
E H 1.0 
S H 1.0 
L H 1.0 
K C 0.7 
P C 1.0 
N C 0.7 
V H 1.0 
K H 1.0 
K H 1.0 
E H 1.0 
A H 1.0 
K H 1.0 
Q H 1.0 
K H 1.0 
A H 0.7 
K H 0.7 
L C 0.7 
D C 1.0 
P C 1.0 
A C 1.0 
K C 1.0 
D C 1.0 
Y C 1.0 
T C 0.7 
Q C 0.7 
D C 0.7 
K C 1.0 
D C 1.0 
C E 0.7 
V E 0.7 
G E 0.7 
C E 0.7 
H E 0.7 
V C 0.7 
D C 1.0 
G C 1.0 
F C 1.0 
G C 1.0 
Q C 1.0 
K C 1.0 
G C 1.0 
G C 0.7 
Y E 0.7 
T E 0.7 
I E 0.7 
E C 0.7 
S C 1.0 
P C 1.0 
K C 1.0 
P C 1.0 
M C 1.0 
L C 0.7 
T C 0.7 
G C 1.0 
V C 0.7 
G C 0.7 
C C 1.0 
E C 1.0 
S C 1.0 
C C 1.0 
H C 1.0 
G C 1.0 
P C 1.0 
G C 1.0 
R C 1.0 
N C 1.0 
F C 1.0 
R C 1.0 
G C 1.0 
D C 1.0 
H C 1.0 
R C 1.0 
K C 1.0 
S C 1.0 
G C 0.7 
Q H 0.7 
A H 0.7 
F H 0.7 
E H 0.7 
K H 0.7 
S C 0.7 
G C 1.0 
K C 1.0 
K C 1.0 
T C 1.0 
P C 1.0 
R H 0.7 
K H 0.7 
D H 0.7 
L H 0.7 
A H 0.7 
K H 0.7 
K H 0.7 
G C 0.7 
Q C 1.0 
D C 1.0 
F C 1.0 
H C 1.0 
F C 0.7 
E C 0.7 
E C 0.7 
R C 0.7 
C C 1.0 
S C 1.0 
A C 1.0 
C C 1.0 
H C 1.0 
L C 1.0 
N C 1.0 
Y C 1.0 
E C 1.0 
G C 1.0 
S C 1.0 
P C 1.0 
W C 1.0 
K C 1.0 
G C 1.0 
A C 1.0 
K C 1.0 
A C 1.0 
P C 1.0 
Y C 1.0 
T C 1.0 
P C 1.0 
F C 1.0 
T C 1.0 
P C 1.0 
E C 1.0 
V C 1.0 
D C 1.0 
A C 1.0 
K C 0.7 
Y C 0.7 
T C 0.7 
F H 0.3 
K H 0.7 
F H 1.0 
D H 1.0 
E H 1.0 
M H 1.0 
V H 1.0 
K H 1.0 
E H 1.0 
V H 1.0 
K H 1.0 
A H 1.0 
M H 1.0 
H H 1.0 
E H 1.0 
H H 1.0 
Y H 1.0 
K C 0.7 
L H 0.3 
E H 0.3 
G C 0.7 
V C 0.7 
F C 0.7 
E C 1.0 
G C 1.0 
E C 1.0 
P C 1.0 
K C 1.0 
F C 1.0 
K C 1.0 
F C 1.0 
H C 0.7 
D H 1.0 
E H 1.0 
F H 1.0 
Q H 1.0 
A H 1.0 
S C 0.7 
A C 1.0 
K C 1.0 
P C 1.0 
A C 1.0 
K C 1.0 
K C 1.0 
G C 1.0 
K C 1.0 
END 
