PFRMAT AL 
TARGET T0043 
AUTHOR 2746-8822-4809 
METHOD SEQFOLD(MSI) IMPLEMENTATION OF FOLD RECOGNITION 
METHOD BASED ON FISCHER AND EISENBERG PROT. SCI. 5, 943, 1996 
METHOD GLOBAL-LOCAL SEQUENCE ALIGNEMENT DRIVEN BY PREDICTED 
METHOD SECONDARY STRUCTURE  
METHOD CONSEQUENTLY - MODELS ARE ALWAYS BASED ON SINGLE SEQUENCE 
METHOD NOVEL SIGNIFICANCE ANALYSIS BASED ON RANDOM ALIGNMENTS  
MODEL 3 
PARENT 1phr 
T 1     S 7     
V 2     V 8     
A 3     L 9     
Y 4     F 10    
I 5     V 11    
A 6     C 12    
I 7     L 13    
G 8     G 14    
S 9     N 15    
N 10    I 16    
L 11    C 17    
A 12    R 18    
S 13    S 19    
P 14    P 20    
L 15    I 21    
REMARK TAR GAP 1 
E 16    E 23    
Q 17    A 24    
V 18    V 25    
N 19    F 26    
A 20    R 27    
A 21    K 28    
L 22    L 29    
K 23    V 30    
A 24    T 31    
L 25    D 32    
G 26    Q 33    
D 27    N 34    
I 28    I 35    
P 29    S 36    
E 30    D 37    
S 31    N 38    
H 32    W 39    
I 33    V 40    
L 34    I 41    
REMARK TAR GAP 3 
T 35    A 45    
V 36    V 46    
S 37    S 47    
S 38    D 48    
F 39    W 49    
Y 40    N 50    
R 41    V 51    
T 42    G 52    
P 43    R 53    
P 44    S 54    
L 45    P 55    
G 46    D 56    
P 47    P 57    
Q 48    R 58    
D 49    A 59    
Q 50    V 60    
P 51    S 61    
D 52    C 62    
Y 53    L 63    
L 54    R 64    
N 55    N 65    
A 56    H 66    
A 57    G 67    
V 58    I 68    
A 59    N 69    
L 60    T 70    
E 61    A 71    
T 62    H 72    
S 63    K 73    
REMARK TAR GAP 3 
L 64    V 77    
A 65    T 78    
P 66    K 79    
E 67    E 80    
E 68    D 81    
L 69    F 82    
L 70    V 83    
N 71    T 84    
H 72    F 85    
T 73    D 86    
Q 74    Y 87    
R 75    I 88    
I 76    L 89    
E 77    C 90    
L 78    M 91    
Q 79    D 92    
Q 80    E 93    
G 81    S 94    
R 82    N 95    
V 83    L 96    
R 84    R 97    
K 85    D 98    
A 86    L 99    
E 87    N 100   
R 88    R 101   
W 89    K 102   
G 90    S 103   
P 91    N 104   
R 92    Q 105   
T 93    V 106   
L 94    K 107   
D 95    N 108   
REMARK TAR GAP 2 
L 96    A 111   
D 97    K 112   
I 98    I 113   
M 99    E 114   
L 100   L 115   
F 101   L 116   
G 102   G 117   
N 103   S 118   
REMARK REF GAP 12 
Y 116   Y 119   
D 117   D 120   
M 118   P 121   
K 119   Q 122   
N 120   K 123   
R 121   Q 124   
G 122   L 125   
F 123   I 126   
M 124   I 127   
L 125   E 128   
W 126   D 129   
P 127   P 130   
L 128   Y 131   
F 129   Y 132   
E 130   G 133   
I 131   N 134   
A 132   D 135   
P 133   A 136   
E 134   D 137   
L 135   F 138   
REMARK REF GAP 3 
D 139   E 139   
G 140   T 140   
E 141   V 141   
M 142   Y 142   
L 143   Q 143   
R 144   Q 144   
Q 145   C 145   
I 146   V 146   
L 147   R 147   
H 148   C 148   
T 149   C 149   
R 150   R 150   
A 151   A 151   
F 152   F 152   
TER 
END 
