PFRMAT AL 
TARGET T0043 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 6/24/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0043" has a significant match 
REMARK pdb1mng_A     5.392     0.214    15.420  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1fvk_A     5.299     0.211    11.085  MOLECULE: DISULFIDE BOND FORMATION PROTEIN; 
REMARK                                          SCOP: 65-128: Alpha; Disulphide-bond formation facilitator (DSBA), insertion domain 
REMARK                                          SCOP: 1-64,129-188: A/B; Thioredoxin-like 
REMARK pdb2gdm       4.801     0.196    11.989  MOLECULE: LEGHEMOGLOBIN (OXY); 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1ncx       4.033     0.172     0.680  MOLECULE: TROPONIN C; 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1isc_A     3.973     0.170    -6.813  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1l68       3.719     0.162    -1.155  LYSOZYME (E.C.3.2.1.17) (MUTANT WITH SER 44 REPLACED BY ALA, 
REMARK                                          SCOP: A+B; Lysozyme-like 
REMARK pdb1rro       3.628     0.160    11.966  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1ofv       3.358     0.151    -1.977  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1jon       3.329     0.150    -0.750  MOLECULE: GROEL, HSP60 CLASS; 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0043        ....................TVAYIAIGSNLASPLEQVNAALKALGDIPE 
REMARK                                    .:|. . . # |||::.:|||.#.:||. 
REMARK pdb1mng_A    PYPFKLPDLGYPYEALEPHIDAKTMEIHQKHHGAVTNLNAALEKYPYLHG 
REMARK  
REMARK t0043        SHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ 
REMARK              . | .| : :..:|   :|  : |. .:: . | ::::||. .  #::   
REMARK pdb1mng_A    VEVEVLLRHLAALP...QDIQTAVRNNGGGHLNSLFWRLLTPGGAKEP.V 
REMARK  
REMARK t0043        GRVRKA..ERWGP.RTLDLDIMLFGNE........VINTER..LTVPHYD 
REMARK              |.|:|:  |.:|. . |: .|.    :        |: |:.  |||. || 
REMARK pdb1mng_A    GELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKLHVLSTP 
REMARK  
REMARK t0043        MKN....RGF.MLWPLFEIAPELVFPDG..EMLRQILHTRAFDKLNKW.. 
REMARK                :     |. .||.|.  |. :  .|.  :||: |::|##| #| |:   
REMARK pdb1mng_A    NQDNPVMEGFTPIVGIVWEAYYLKYQNRRADYLQAIWNVLNWDVAEEFFK 
REMARK  
REMARK t0043        .. 
REMARK                 
REMARK pdb1mng_A    KA 
REMARK  
PARENT 1mng_A 
T 1  D 21 
V 2  A 22 
A 3  K 23 
Y 4  T 24 
I 5  M 25 
A 6  E 26 
I 7  I 27 
G 8  H 29 
S 9  Q 30 
N 10  K 31 
L 11  H 32 
A 12  H 33 
S 13  G 34 
P 14  A 35 
L 15  V 37 
E 16  T 38 
Q 17  N 39 
V 18  L 40 
N 19  N 41 
A 20  A 42 
A 21  A 43 
L 22  L 44 
K 23  E 45 
A 24  K 46 
L 25  Y 47 
G 26  P 48 
D 27  Y 49 
I 28  L 50 
P 29  H 51 
E 30  G 52 
S 31  V 53 
H 32  E 54 
I 33  V 55 
L 34  E 56 
T 35  V 57 
V 36  L 58 
S 37  L 59 
S 38  R 60 
F 39  H 61 
Y 40  L 62 
R 41  A 63 
T 42  A 64 
P 43  L 65 
P 44  P 66 
Q 48  Q 67 
D 49  D 68 
Q 50  I 69 
P 51  Q 70 
D 52  T 71 
Y 53  A 72 
L 54  V 73 
N 55  R 74 
A 56  N 75 
A 57  N 76 
V 58  G 77 
A 59  G 78 
L 60  G 79 
E 61  H 80 
T 62  L 81 
S 63  N 82 
L 64  S 84 
A 65  L 85 
P 66  F 86 
E 67  W 87 
E 68  R 88 
L 69  L 89 
L 70  L 90 
N 71  T 91 
H 72  P 92 
T 73  G 93 
Q 74  G 94 
R 75  A 95 
I 76  K 96 
E 77  E 97 
L 78  P 98 
Q 80  V 99 
G 81  G 100 
R 82  E 101 
V 83  L 102 
R 84  K 103 
K 85  K 104 
A 86  A 105 
E 87  E 108 
R 88  Q 109 
W 89  F 110 
G 90  G 111 
P 91  G 112 
R 92  Q 114 
T 93  A 115 
L 94  L 116 
D 95  K 117 
L 96  E 118 
D 97  K 119 
I 98  L 120 
M 99  T 121 
L 100  Q 122 
F 101  A 123 
G 102  A 124 
N 103  M 125 
E 104  G 126 
V 105  L 135 
I 106  V 136 
N 107  K 137 
T 108  D 138 
E 109  P 139 
R 110  F 140 
L 111  L 143 
T 112  H 144 
V 113  V 145 
P 114  L 146 
H 115  S 147 
Y 116  T 148 
D 117  P 149 
M 118  N 150 
K 119  Q 151 
N 120  D 152 
R 121  E 157 
G 122  G 158 
F 123  F 159 
M 124  P 161 
L 125  I 162 
W 126  V 163 
P 127  G 164 
L 128  I 165 
F 129  V 167 
E 130  W 168 
I 131  E 169 
A 132  A 171 
P 133  Y 172 
E 134  Y 173 
L 135  L 174 
V 136  K 175 
F 137  Y 176 
P 138  Q 177 
D 139  N 178 
G 140  R 179 
E 141  D 182 
M 142  Y 183 
L 143  L 184 
R 144  Q 185 
Q 145  A 186 
I 146  I 187 
L 147  W 188 
H 148  N 189 
T 149  V 190 
R 150  L 191 
A 151  N 192 
F 152  W 193 
D 153  D 194 
K 154  V 195 
L 155  A 196 
N 156  E 197 
K 157  E 198 
W 158  F 199 
TER 
END 
