PFRMAT AL 
TARGET T0043 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 6/24/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0043" has a significant match 
REMARK pdb1mng_A     5.392     0.214    15.420  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1fvk_A     5.299     0.211    11.085  MOLECULE: DISULFIDE BOND FORMATION PROTEIN; 
REMARK                                          SCOP: 65-128: Alpha; Disulphide-bond formation facilitator (DSBA), insertion domain 
REMARK                                          SCOP: 1-64,129-188: A/B; Thioredoxin-like 
REMARK pdb2gdm       4.801     0.196    11.989  MOLECULE: LEGHEMOGLOBIN (OXY); 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1ncx       4.033     0.172     0.680  MOLECULE: TROPONIN C; 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1isc_A     3.973     0.170    -6.813  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1l68       3.719     0.162    -1.155  LYSOZYME (E.C.3.2.1.17) (MUTANT WITH SER 44 REPLACED BY ALA, 
REMARK                                          SCOP: A+B; Lysozyme-like 
REMARK pdb1rro       3.628     0.160    11.966  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1ofv       3.358     0.151    -1.977  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1jon       3.329     0.150    -0.750  MOLECULE: GROEL, HSP60 CLASS; 
REMARK                                          SCOP: A/B; The "swivelling" beta/beta/alpha domain 
MODEL  2 
REMARK Sequence alignment follows: 
REMARK t0043        .................................................. 
REMARK                                                                 
REMARK pdb1fvk_A    AQYEDGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKL 
REMARK  
REMARK t0043        .......TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTP 
REMARK                     |.#|# :|. :|. |||| :||.|.|  |.  #  :  |:... 
REMARK pdb1fvk_A    PEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALGVEDKVTVPLFEGVQKTQ 
REMARK  
REMARK t0043        PLGPQDQPDYLNAAVALETSLAPE.ELLNHTQRIELQQGRVRKA.ERWGP 
REMARK               |   ...: |::||. .. #:|: | | . |.||  . :::|| |.:.| 
REMARK pdb1fvk_A    TI...RSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQL 
REMARK  
REMARK t0043        RTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGE 
REMARK              . | . ||| |. |:| :   |..  ||.   ||  | ||| :|: |    
REMARK pdb1fvk_A    RGV.PAMFVNGKYQLNPQ..GMDTSNMDV...FVQQYADTVKYLSEK... 
REMARK  
REMARK t0043        MLRQILHTRAFDKLNKW 
REMARK                                
REMARK pdb1fvk_A    ................. 
REMARK  
PARENT 1fvk_A 
T 1  K 58 
V 2  Y 59 
A 3  H 60 
Y 4  V 61 
I 5  N 62 
A 6  F 63 
I 7  M 64 
G 8  G 65 
S 9  G 66 
N 10  D 67 
L 11  L 68 
A 12  G 69 
S 13  K 70 
P 14  D 71 
L 15  L 72 
E 16  T 73 
Q 17  Q 74 
V 18  A 75 
N 19  W 76 
A 20  A 77 
A 21  V 78 
L 22  A 79 
K 23  M 80 
A 24  A 81 
L 25  L 82 
G 26  G 83 
D 27  V 84 
I 28  E 85 
P 29  D 86 
E 30  K 87 
S 31  V 88 
H 32  T 89 
I 33  V 90 
L 34  P 91 
T 35  L 92 
V 36  F 93 
S 37  E 94 
S 38  G 95 
F 39  V 96 
Y 40  Q 97 
R 41  K 98 
T 42  T 99 
P 43  Q 100 
P 44  T 101 
L 45  I 102 
D 49  R 103 
Q 50  S 104 
P 51  A 105 
D 52  S 106 
Y 53  D 107 
L 54  I 108 
N 55  R 109 
A 56  D 110 
A 57  V 111 
V 58  F 112 
A 59  I 113 
L 60  N 114 
E 61  A 115 
T 62  G 116 
S 63  I 117 
L 64  K 118 
A 65  G 119 
P 66  E 120 
E 67  E 121 
E 68  D 123 
L 69  A 124 
L 70  A 125 
N 71  W 126 
H 72  N 127 
T 73  S 128 
Q 74  F 129 
R 75  V 130 
I 76  V 131 
E 77  K 132 
L 78  S 133 
Q 79  L 134 
Q 80  V 135 
G 81  A 136 
R 82  Q 137 
V 83  Q 138 
R 84  E 139 
K 85  K 140 
A 86  A 141 
E 87  A 143 
R 88  D 144 
W 89  V 145 
G 90  Q 146 
P 91  L 147 
R 92  R 148 
T 93  G 149 
L 94  V 150 
L 96  P 151 
D 97  A 152 
I 98  M 153 
M 99  F 154 
L 100  V 155 
F 101  N 156 
G 102  G 157 
N 103  K 158 
E 104  Y 159 
V 105  Q 160 
I 106  L 161 
N 107  N 162 
T 108  P 163 
E 109  Q 164 
T 112  G 165 
V 113  M 166 
P 114  D 167 
H 115  T 168 
Y 116  S 169 
D 117  N 170 
M 118  M 171 
K 119  D 172 
N 120  V 173 
M 124  F 174 
L 125  V 175 
W 126  Q 176 
P 127  Q 177 
L 128  Y 178 
F 129  A 179 
E 130  D 180 
I 131  T 181 
A 132  V 182 
P 133  K 183 
E 134  Y 184 
L 135  L 185 
V 136  S 186 
F 137  E 187 
P 138  K 188 
TER 
END 
