PFRMAT AL 
TARGET T0043 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 6/24/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,329 domain-based structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0043" has a possible match 
REMARK 1nbcAa_A      4.904     0.212    10.091  MOLECULE: CELLULOSOMAL SCAFFOLDING PROTEIN A; 
REMARK                                          SCOP: Beta; Common fold of diphtheria toxin/transcription factors/cytochrome f 
REMARK pdb1ypr_A     3.957     0.181     2.474  MOLECULE: PROFILIN; 
REMARK pdb1hiw_Q     3.669     0.171    14.959  MOLECULE: HIV-1 MATRIX PROTEIN; 
REMARK                                          SCOP: Alpha; Retroviral matrix proteins 
REMARK pdb1ac1_A     3.660     0.171    10.512  MOLECULE: DSBA; 
REMARK                                          SCOP: 65-128: Alpha; Disulphide-bond formation facilitator (DSBA), insertion domain 
REMARK                                          SCOP: 1-64,129-188: A/B; Thioredoxin-like 
REMARK pdb1gdi       3.580     0.168    16.186  LEGHEMOGLOBIN (CARBON MONOXY) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK 1uae_a        3.443     0.163     7.356  MOLECULE: UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE; 
REMARK                                          SCOP: A+B; IF3-like 
REMARK 1lam_a        3.364     0.161    13.645  MOLECULE: LEUCINE AMINOPEPTIDASE; 
REMARK                                          SCOP: 1-159: A/B; Leucine aminopeptidase, N-terminal domain 
REMARK                                          SCOP: 160-484: A/B; Phosphorylase/hydrolase-like 
REMARK pdb1rro       3.325     0.160    11.966  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK 1gsa_a        3.253     0.157    -1.729  MOLECULE: GLUTATHIONE SYNTHETASE; 
REMARK                                          SCOP: 1-122: A/B; Biotin carboxylase N-terminal domain-like 
REMARK                                          SCOP: 123-314: A+B; ATP-grasp 
MODEL  3 
REMARK Sequence alignment follows: 
REMARK t0043        ...................TVAYIAIGSNLASPLEQVNAALKALGDIPES 
REMARK                                 .:: |#:  |   .| :| | |.  #| | . 
REMARK 1nbcAa_A     NLKVEFYNSNPSDTTNSINPQFKVTNTGSSAIDLSKLTLRYYYTVDGQKD 
REMARK  
REMARK t0043        HILTVSSFYRTPPLGPQDQ.PDYLNAAVALETSLAPEELLNHTQRIELQQ 
REMARK              : |:|:||: .|:#||.:  :|.|   | |.      | :| :  | ||# 
REMARK 1nbcAa_A     QTFWCDHAAIIGSNGSYNGITSNVK..GTFVKMSSSTNNADTYLEISFTG 
REMARK  
REMARK t0043        GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFE 
REMARK              |.|..    |: .| || .||#| ## :  #|||||               
REMARK 1nbcAa_A     GTLEP....GA.HVQIQGRFAKNDWSNYTQSNDYSF.............. 
REMARK  
REMARK t0043        IAPELVFPDGEMLRQILHTRAFDKLNKW 
REMARK                                           
REMARK 1nbcAa_A     ............................ 
REMARK  
PARENT 1nbc_A 
T 1  P 20 
V 2  Q 21 
A 3  F 22 
Y 4  K 23 
I 5  V 24 
A 6  T 25 
I 7  N 26 
G 8  T 27 
S 9  G 28 
N 10  S 29 
L 11  S 30 
A 12  A 31 
S 13  I 32 
P 14  D 33 
L 15  L 34 
E 16  S 35 
Q 17  K 36 
V 18  L 37 
N 19  T 38 
A 20  L 39 
A 21  R 40 
L 22  Y 41 
K 23  Y 42 
A 24  Y 43 
L 25  T 44 
G 26  V 45 
D 27  D 46 
I 28  G 47 
P 29  Q 48 
E 30  K 49 
S 31  D 50 
H 32  Q 51 
I 33  T 52 
L 34  F 53 
T 35  W 54 
V 36  C 55 
S 37  D 56 
S 38  H 57 
F 39  A 58 
Y 40  A 59 
R 41  I 60 
T 42  I 61 
P 43  G 62 
P 44  S 63 
L 45  N 64 
G 46  G 65 
P 47  S 66 
Q 48  Y 67 
D 49  N 68 
Q 50  G 69 
P 51  T 71 
D 52  S 72 
Y 53  N 73 
L 54  V 74 
N 55  K 75 
V 58  G 76 
A 59  T 77 
L 60  F 78 
E 61  V 79 
T 62  K 80 
S 63  M 81 
L 64  S 82 
A 65  S 83 
P 66  S 84 
E 67  T 85 
E 68  N 86 
L 69  N 87 
L 70  A 88 
N 71  D 89 
H 72  T 90 
T 73  Y 91 
Q 74  L 92 
R 75  E 93 
I 76  I 94 
E 77  S 95 
L 78  F 96 
Q 79  T 97 
Q 80  G 98 
G 81  G 99 
R 82  T 100 
V 83  L 101 
R 84  E 102 
K 85  P 103 
G 90  G 104 
P 91  A 105 
T 93  H 106 
L 94  V 107 
D 95  Q 108 
L 96  I 109 
D 97  Q 110 
I 98  G 111 
M 99  R 112 
L 100  F 113 
F 101  A 114 
G 102  K 115 
N 103  N 116 
E 104  D 117 
V 105  W 118 
I 106  S 119 
N 107  N 120 
T 108  Y 121 
E 109  T 122 
R 110  Q 123 
L 111  S 124 
T 112  N 125 
V 113  D 126 
P 114  Y 127 
H 115  S 128 
Y 116  F 129 
TER 
END 
