PFRMAT AL 
TARGET T0044 
AUTHOR 2746-8822-4809 
METHOD SEQFOLD(MSI) IMPLEMENTATION OF FOLD RECOGNITION 
METHOD BASED ON FISCHER AND EISENBERG PROT. SCI. 5, 943, 1996 
METHOD GLOBAL-LOCAL SEQUENCE ALIGNEMENT DRIVEN BY PREDICTED 
METHOD SECONDARY STRUCTURE  
METHOD CONSEQUENTLY - MODELS ARE ALWAYS BASED ON SINGLE SEQUENCE 
METHOD NOVEL SIGNIFICANCE ANALYSIS BASED ON RANDOM ALIGNMENTS  
METHOD FOLD LIBRARY BASED ON SCOP 1.37 RELEASE  
MODEL 1 
PARENT 2mas_A 
K 3     A 2     
R 4     K 3     
M 5     K 4     
I 6     I 5     
A 7     I 6     
L 8     L 7     
D 9     D 8     
G 10    C 9     
A 11    D 10    
Q 12    P 11    
G 13    G 12    
REMARK REF GAP 6 
L 20    L 13    
R 21    D 14    
S 22    D 15    
A 23    A 16    
L 24    V 17    
S 25    A 18    
L 26    I 19    
S 27    L 20    
M 28    L 21    
I 29    A 22    
T 30    H 23    
G 31    G 24    
Q 32    N 25    
P 33    P 26    
REMARK TAR GAP 4 
F 34    L 31    
T 35    A 32    
I 36    I 33    
T 37    T 34    
S 38    T 35    
I 39    V 36    
REMARK REF GAP 1 
A 41    V 37    
G 42    G 38    
R 43    N 39    
A 44    Q 40    
K 45    T 41    
P 46    L 42    
G 47    A 43    
L 48    K 44    
L 49    V 45    
R 50    T 46    
Q 51    R 47    
H 52    N 48    
L 53    A 49    
T 54    Q 50    
A 55    L 51    
V 56    V 52    
K 57    A 53    
A 58    D 54    
A 59    I 55    
T 60    A 56    
E 61    G 57    
I 62    I 58    
C 63    T 59    
G 64    G 60    
A 65    V 61    
T 66    P 62    
V 67    I 63    
E 68    A 64    
REMARK TAR GAP 1 
G 69    G 66    
A 70    C 67    
E 71    D 68    
L 72    K 69    
G 73    P 70    
S 74    L 71    
Q 75    V 72    
R 76    R 73    
L 77    K 74    
L 78    I 75    
F 79    M 76    
R 80    T 77    
P 81    A 78    
G 82    G 79    
T 83    H 80    
V 84    I 81    
R 85    H 82    
G 86    G 83    
REMARK TAR GAP 10 
G 87    A 94    
D 88    E 95    
Y 89    F 96    
R 90    K 97    
F 91    N 98    
A 92    K 99    
I 93    V 100   
G 94    D 101   
S 95    E 102   
A 96    R 103   
G 97    H 104   
S 98    A 105   
C 99    V 106   
T 100   N 107   
L 101   L 108   
V 102   I 109   
L 103   I 110   
Q 104   D 111   
T 105   L 112   
V 106   V 113   
L 107   M 114   
REMARK REF GAP 5 
A 113   S 115   
D 114   H 116   
G 115   E 117   
P 116   P 118   
S 117   K 119   
R 118   T 120   
V 119   I 121   
E 120   T 122   
V 121   L 123   
REMARK TAR GAP 2 
S 122   T 126   
G 123   G 127   
G 124   G 128   
T 125   L 129   
D 126   T 130   
N 127   N 131   
REMARK REF GAP 5 
A 133   I 132   
D 134   A 133   
F 135   M 134   
I 136   A 135   
R 137   A 136   
R 138   R 137   
V 139   L 138   
L 140   E 139   
E 141   P 140   
P 142   R 141   
L 143   I 142   
L 144   V 143   
A 145   D 144   
K 146   R 145   
I 147   V 146   
REMARK REF GAP 3 
Q 151   K 147   
Q 152   E 148   
T 153   V 149   
T 154   V 150   
L 155   L 151   
L 156   M 152   
REMARK REF GAP 7 
G 164   G 153   
G 165   G 154   
G 166   G 155   
V 167   Y 156   
V 168   H 157   
A 169   E 158   
T 170   G 159   
E 171   N 160   
V 172   A 161   
S 173   T 162   
P 174   S 163   
V 175   V 164   
A 176   A 165   
S 177   E 166   
F 178   F 167   
N 179   N 168   
T 180   I 169   
L 181   I 170   
Q 182   I 171   
L 183   D 172   
G 184   P 173   
E 185   E 174   
R 186   A 175   
G 187   A 176   
N 188   H 177   
I 189   I 178   
REMARK TAR GAP 7 
V 190   V 186   
Q 191   T 187   
M 192   M 188   
R 193   V 189   
G 194   G 190   
REMARK TAR GAP 4 
E 195   H 195   
V 196   Q 196   
L 197   A 197   
L 198   L 198   
A 199   A 199   
G 200   T 200   
V 201   P 201   
P 202   P 202   
R 203   I 203   
H 204   L 204   
V 205   Q 205   
A 206   R 206   
E 207   V 207   
R 208   K 208   
E 209   E 209   
I 210   V 210   
A 211   D 211   
T 212   T 212   
L 213   N 213   
A 214   P 214   
G 215   A 215   
S 216   R 216   
F 217   F 217   
S 218   M 218   
L 219   L 219   
H 220   E 220   
E 221   I 221   
Q 222   M 222   
N 223   D 223   
I 224   Y 224   
H 225   Y 225   
N 226   T 226   
L 227   K 227   
P 228   I 228   
R 229   Y 229   
D 230   Q 230   
REMARK REF GAP 16 
T 247   S 231   
E 248   N 232   
R 249   R 233   
F 250   Y 234   
F 251   M 235   
V 252   A 236   
V 253   A 237   
G 254   A 238   
E 255   A 239   
K 256   V 240   
R 257   H 241   
REMARK REF GAP 3 
E 261   D 242   
V 262   P 243   
V 263   C 244   
A 264   A 245   
A 265   V 246   
Q 266   A 247   
L 267   Y 248   
V 268   V 249   
K 269   I 250   
E 270   D 251   
V 271   P 252   
K 272   S 253   
R 273   V 254   
Y 274   M 255   
L 275   T 256   
A 276   T 257   
S 277   E 258   
T 278   R 259   
A 279   V 260   
A 280   P 261   
V 281   V 262   
G 282   D 263   
E 283   I 264   
Y 284   E 265   
L 285   L 266   
A 286   T 267   
D 287   G 268   
Q 288   K 269   
L 289   L 270   
V 290   T 271   
L 291   L 272   
P 292   G 273   
M 293   M 274   
A 294   T 275   
L 295   V 276   
A 296   A 277   
REMARK REF GAP 3 
E 300   D 278   
F 301   F 279   
T 302   R 280   
V 303   N 281   
A 304   P 282   
H 305   R 283   
P 306   P 284   
S 307   E 285   
REMARK TAR GAP 1 
C 308   C 287   
H 309   H 288   
L 310   T 289   
L 311   Q 290   
T 312   V 291   
N 313   A 292   
I 314   V 293   
A 315   K 294   
V 316   L 295   
REMARK TAR GAP 1 
V 317   F 297   
E 318   E 298   
R 319   K 299   
F 320   F 300   
L 321   W 301   
P 322   G 302   
V 323   L 303   
R 324   V 304   
F 325   L 305   
S 326   D 306   
L 327   A 307   
I 328   L 308   
E 329   E 309   
T 330   R 310   
D 331   I 311   
G 332   G 312   
TER 
END 
