PFRMAT AL 
TARGET T0044 
AUTHOR 2746-8822-4809 
METHOD SEQFOLD(MSI) IMPLEMENTATION OF FOLD RECOGNITION 
METHOD BASED ON FISCHER AND EISENBERG PROT. SCI. 5, 943, 1996 
METHOD GLOBAL-LOCAL SEQUENCE ALIGNEMENT DRIVEN BY PREDICTED 
METHOD SECONDARY STRUCTURE  
METHOD CONSEQUENTLY - MODELS ARE ALWAYS BASED ON SINGLE SEQUENCE 
METHOD NOVEL SIGNIFICANCE ANALYSIS BASED ON RANDOM ALIGNMENTS  
METHOD FOLD LIBRARY BASED ON SCOP 1.37 RELEASE  
MODEL 3 
REMARK THIS IS EXTREMELY UNIQUE ALIGNMENT. IF THE SCORE WAS 
REMARK HIGHER, IT WOULD BE FIRST CHOICE   
PARENT 1pea 
F 34    F 14    
T 35    S 15    
I 36    E 16    
T 37    T 17    
S 38    G 18    
I 39    V 19    
R 40    T 20    
A 41    A 21    
G 42    D 22    
R 43    I 23    
A 44    E 24    
K 45    R 25    
P 46    S 26    
G 47    Q 27    
L 48    R 28    
L 49    Y 29    
R 50    G 30    
Q 51    A 31    
H 52    L 32    
L 53    L 33    
T 54    A 34    
A 55    V 35    
V 56    E 36    
K 57    Q 37    
A 58    L 38    
A 59    N 39    
T 60    R 40    
E 61    E 41    
REMARK REF GAP 3 
A 65    G 42    
T 66    G 43    
V 67    V 44    
E 68    G 45    
G 69    G 46    
A 70    R 47    
E 71    P 48    
L 72    I 49    
REMARK REF GAP 2 
Q 75    E 50    
R 76    T 51    
L 77    L 52    
L 78    S 53    
F 79    Q 54    
R 80    D 55    
P 81    P 56    
G 82    G 57    
T 83    G 58    
REMARK TAR GAP 12 
V 84    I 71    
R 85    R 72    
G 86    N 73    
G 87    R 74    
D 88    G 75    
Y 89    V 76    
R 90    R 77    
F 91    F 78    
A 92    L 79    
I 93    V 80    
G 94    G 81    
S 95    C 82    
REMARK TAR GAP 12 
A 96    V 95    
G 97    E 96    
S 98    R 97    
C 99    A 98    
T 100   D 99    
L 101   A 100   
V 102   L 101   
L 103   L 102   
Q 104   C 103   
T 105   Y 104   
V 106   P 105   
L 107   T 106   
P 108   P 107   
A 109   Y 108   
L 110   E 109   
W 111   G 110   
F 112   F 111   
A 113   E 112   
D 114   Y 113   
G 115   S 114   
P 116   P 115   
S 117   N 116   
R 118   I 117   
V 119   V 118   
E 120   Y 119   
V 121   G 120   
S 122   G 121   
G 123   P 122   
G 124   A 123   
T 125   P 124   
D 126   N 125   
N 127   Q 126   
P 128   N 127   
S 129   S 128   
A 130   A 129   
P 131   P 130   
P 132   L 131   
A 133   A 132   
D 134   A 133   
F 135   Y 134   
I 136   L 135   
R 137   I 136   
R 138   R 137   
V 139   H 138   
L 140   Y 139   
E 141   G 140   
P 142   E 141   
L 143   R 142   
L 144   V 143   
A 145   V 144   
K 146   F 145   
I 147   I 146   
G 148   G 147   
I 149   S 148   
REMARK TAR GAP 5 
H 150   R 154   
Q 151   E 155   
Q 152   S 156   
T 153   N 157   
T 154   H 158   
L 155   V 159   
L 156   M 160   
R 157   R 161   
H 158   H 162   
G 159   L 163   
F 160   Y 164   
Y 161   R 165   
P 162   Q 166   
A 163   H 167   
G 164   G 168   
G 165   G 169   
G 166   T 170   
V 167   V 171   
V 168   L 172   
A 169   E 173   
T 170   E 174   
E 171   I 175   
V 172   Y 176   
S 173   I 177   
P 174   P 178   
V 175   L 179   
A 176   Y 180   
S 177   P 181   
F 178   S 182   
N 179   D 183   
T 180   D 184   
L 181   D 185   
Q 182   L 186   
L 183   Q 187   
G 184   R 188   
E 185   A 189   
R 186   V 190   
G 187   E 191   
N 188   R 192   
I 189   I 193   
V 190   Y 194   
Q 191   Q 195   
M 192   A 196   
R 193   R 197   
G 194   A 198   
E 195   D 199   
V 196   V 200   
L 197   V 201   
L 198   F 202   
A 199   S 203   
REMARK TAR GAP 3 
G 200   G 207   
V 201   T 208   
P 202   G 209   
R 203   T 210   
H 204   A 211   
V 205   E 212   
A 206   L 213   
E 207   Y 214   
R 208   R 215   
E 209   A 216   
I 210   I 217   
A 211   A 218   
T 212   R 219   
L 213   R 220   
A 214   Y 221   
G 215   G 222   
REMARK TAR GAP 8 
S 216   S 231   
F 217   L 232   
S 218   T 233   
L 219   T 234   
H 220   S 235   
E 221   E 236   
Q 222   A 237   
N 223   E 238   
I 224   V 239   
H 225   A 240   
N 226   K 241   
L 227   M 242   
P 228   E 243   
R 229   S 244   
D 230   D 245   
Q 231   V 246   
G 232   A 247   
P 233   E 248   
G 234   G 249   
N 235   Q 250   
T 236   V 251   
V 237   V 252   
REMARK REF GAP 9 
T 247   V 253   
E 248   A 254   
R 249   P 255   
F 250   Y 256   
F 251   F 257   
V 252   S 258   
V 253   S 259   
G 254   I 260   
E 255   D 261   
K 256   T 262   
R 257   P 263   
REMARK REF GAP 5 
V 263   A 264   
A 264   S 265   
A 265   R 266   
Q 266   A 267   
L 267   F 268   
V 268   V 269   
K 269   Q 270   
E 270   A 271   
V 271   C 272   
K 272   H 273   
R 273   G 274   
Y 274   F 275   
L 275   F 276   
A 276   P 277   
S 277   E 278   
T 278   N 279   
A 279   A 280   
A 280   T 281   
V 281   I 282   
G 282   T 283   
E 283   A 284   
Y 284   W 285   
L 285   A 286   
A 286   E 287   
REMARK TAR GAP 4 
D 287   Q 292   
Q 288   T 293   
L 289   L 294   
V 290   L 295   
L 291   L 296   
P 292   G 297   
M 293   R 298   
A 294   A 299   
L 295   A 300   
A 296   Q 301   
G 297   A 302   
A 298   A 303   
G 299   G 304   
E 300   N 305   
F 301   W 306   
T 302   R 307   
V 303   V 308   
A 304   E 309   
H 305   D 310   
P 306   V 311   
S 307   Q 312   
C 308   R 313   
H 309   H 314   
L 310   L 315   
L 311   Y 316   
REMARK REF GAP 1 
N 313   D 317   
I 314   I 318   
A 315   D 319   
V 316   I 320   
REMARK TAR GAP 8 
V 317   V 329   
E 318   E 330   
R 319   R 331   
F 320   Q 332   
REMARK TAR GAP 5 
L 321   L 338   
P 322   S 339   
V 323   S 340   
R 324   R 341   
F 325   I 342   
S 326   A 343   
L 327   E 344   
I 328   I 345   
E 329   D 346   
T 330   A 347   
D 331   R 348   
G 332   G 349   
V 333   V 350   
T 334   F 351   
R 335   Q 352   
V 336   V 353   
S 337   R 354   
I 338   W 355   
E 339   Q 356   
G 340   S 357   
S 341   P 358   
H 342   E 359   
TER 
END 
