PFRMAT AL 
TARGET T0044 
AUTHOR 9808-8259-1323 
METHOD Searched pdb sequences with max. 90% identity using a profile made 
METHOD from target sequence and PAM250. Alignments were set to length of 
METHOD profile. 
REMARK Results: 
REMARK  Profile : t0044.seqprf 
REMARK  Length  : 347 
REMARK  Database file   1 : /disk1/rluethy/test/casp3/pdb90.seq 
REMARK  Gap opening penalty   :   1.70 
REMARK  Gap extension penalty :   0.20 
REMARK  alignment method = GLOBAL_N 
REMARK          Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1kobA               +   6.79   7.05  352. ! Resolution=2.30  352 residues MOL_ID: 1; 
REMARK pdb90:3adk                +   5.74   6.40  195. !  Resolution=2.10  195 residues ADENYLATE KINASE (E.C.2.7.4.3) 
REMARK pdb90:1aew                +   5.19   6.06  170. !  Resolution=1.95  170 residues MOL_ID: 1; 
REMARK pdb90:1rgp                +   4.88   5.87  189. !  Resolution=2.00  189 residues MOL_ID: 1; 
REMARK                            .         .         .         .         . 
REMARK                35 KKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFI 
REMARK                   |||:.    | :    .    |   |.| | | |      :    | ||: 
REMARK t0044         272 KRYLASTAAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTDIAVVERFL 
REMARK                            .         . 
REMARK                85 NTPYPLDKYTVKNEISIMNQLHH 
REMARK                      |.|        |.|    || 
REMARK t0044         322 PVRFSLIETDGVTRVSIEGSHHH 
REMARK 
MODEL  1 
PARENT 1kob_A 
K 272    K  35 
R 273    K  36 
Y 274    Y  37 
L 275    V  38 
A 276    P  39 
S 277    Q  40 
T 278    P  41 
A 279    V  42 
A 280    E  43 
V 281    V  44 
G 282    K  45 
E 283    Q  46 
Y 284    G  47 
L 285    S  48 
A 286    V  49 
D 287    Y  50 
Q 288    D  51 
L 289    Y  52 
V 290    Y  53 
L 291    D  54 
P 292    I  55 
M 293    L  56 
A 294    E  57 
L 295    E  58 
A 296    L  59 
G 297    G  60 
A 298    S  61 
G 299    G  62 
E 300    A  63 
F 301    F  64 
T 302    G  65 
V 303    V  66 
A 304    V  67 
H 305    H  68 
P 306    R  69 
S 307    C  70 
C 308    V  71 
H 309    E  72 
L 310    K  73 
L 311    A  74 
T 312    T  75 
N 313    G  76 
I 314    R  77 
A 315    V  78 
V 316    F  79 
V 317    V  80 
E 318    A  81 
R 319    K  82 
F 320    F  83 
L 321    I  84 
P 322    N  85 
V 323    T  86 
R 324    P  87 
F 325    Y  88 
S 326    P  89 
L 327    L  90 
I 328    D  91 
E 329    K  92 
T 330    Y  93 
D 331    T  94 
G 332    V  95 
V 333    K  96 
T 334    N  97 
R 335    E  98 
V 336    I  99 
S 337    S 100 
I 338    I 101 
E 339    M 102 
G 340    N 103 
S 341    Q 104 
H 342    L 105 
H 343    H 106 
H 344    H 107 
TER 
END 
