PFRMAT     AL 
TARGET     T0046 
AUTHOR     7545-6133-3082 
REMARK      
METHOD   blastp was used to find homologous sequences of which a multiple   
METHOD   sequences alignment was build and used as seed for HMMer. The 
METHOD   resulting hmm was used to search against a version of pdb which 
METHOD   only contains proteins of less than 90% homology. No significant 
METHOD   hits were found during this procedure. 
METHOD   A specifically developed neural network scored all alignments on 
METHOD   basis of their secondary structure overlap. Six of the top ten 
METHOD   hits turned out to be immunoglobulin-like beta-sandwiches. The 
METHOD   structure with the highest score showed no functional similarity 
METHOD   to the target, while the second best hit has a more similar 
METHOD   function, thus it was chosen as the parent for the model. 
MODEL 1 
PARENT 1fna 
L       12      G       6 
K       13      S       7 
I       14      L       8 
E       15      E       9 
F       16      V       10 
T       17      V       11 
F       18      A       12 
E       19      A       13 
R       20      T       14 
S       21      P       15 
T       28      T       16 
V       29      S       17 
I       30      L       18 
T       31      L       19 
I       32      I       20 
Q       33      S       21 
A       34      W       22 
S       35      D       23 
T       38      A       24 
E       39      P       25 
D       41      A       26 
M       42      V       27 
T       43      T       28 
D       44      V       29 
F       45      R       30 
V       46      Y       31 
F       47      Y       32 
Q       48      R       33 
A       49      I       34 
A       50      T       35 
V       51      Y       36 
P       52      G       37 
K       53      E       38 
T       54      T       39 
Q       58      G       40 
L       59      G       41 
L       60      N       42 
S       61      S       43 
P       62      P       44 
S       63      V       45 
S       64      Q       46 
S       65      E       47 
V       66      F       48 
V       67      T       49 
P       68      V       50 
A       69      P       51 
F       70      G       52 
N       71      S       53 
T       72      K       54 
G       73      S       55 
T       76      T       56 
Q       77      A       57 
V       78      T       58 
I       79      I       59 
K       80      S       60 
V       81      G       61 
L       82      L       62 
N       83      K       63 
P       84      P       64 
Q       85      G       65 
K       86      V       66 
Q       87      D       67 
Q       88      Y       68 
L       89      T       69 
R       90      I       70 
M       91      T       71 
R       92      V       72 
I       93      Y       73 
K       94      A       74 
L       95      V       75 
T       96      T       76 
Y       97      G       77 
N       98      R       78 
H       99      G       79 
K       100     D       80 
G       101     S       81 
S       102     P       82 
A       103     A       83 
M       104     S       84 
Q       105     S       85 
D       106     K       86 
L       107     P       87 
A       108     I       88 
S       117     S       89 
W       118     I       90 
Q       119     N       91 
TER 
END 
