PFRMAT     AL 
TARGET     T0046 
AUTHOR     7545-6133-3082 
REMARK      
METHOD   blastp was used to find homologous sequences of which a multiple   
METHOD   sequences alignment was build and used as seed for HMMer. The 
METHOD   resulting hmm was used to search against a version of pdb which 
METHOD   only contains proteins of less than 90% homology. No significant 
METHOD   hits were found during this procedure. 
METHOD   A specifically developed neural network scored all alignments on 
METHOD   basis of their secondary structure overlap. Six of the top ten 
METHOD   hits turned out to be immunoglobulin-like beta-sandwiches. The 
METHOD   structure with the highest score showed no functional similarity 
METHOD   to the target, while the second best hit has a more similar 
METHOD   function. However, in a blind prediction the best hit (matching 
METHOD   the consensus of the top ten) would have been taken, so the 
METHOD   second model uses this best hit as parent. 
MODEL 2 
PARENT 2mcm 
K       9       A       1 
N       10      P       2 
G       11      G       3 
L       12      V       4 
K       13      T       5 
I       14      V       6 
E       15      T       7 
F       16      P       8 
T       17      A       9 
F       18      T       10 
E       19      G       11 
R       20      L       12 
S       21      S       13 
S       26      N       14 
V       27      G       15 
T       28      Q       16 
V       29      T       17 
I       30      V       18 
T       31      T       19 
I       32      V       20 
Q       33      S       21 
A       34      A       22 
S       35      T       23 
N       36      G       24 
S       37      L       25 
T       38      T       26 
E       39      P       27 
D       41      G       28 
M       42      T       29 
T       43      V       30 
D       44      Y       31 
F       45      H       32 
V       46      V       33 
F       47      G       34 
Q       48      Q       35 
A       49      C       36 
A       50      A       37 
V       51      V       38 
P       52      V       39 
K       53      E       40 
T       54      P       41 
F       55      G       42 
Q       56      V       43 
L       57      I       44 
Q       58      G       45 
L       59      C       46 
L       60      D       47 
S       61      A       48 
P       62      T       49 
S       63      T       50 
S       64      S       51 
S       65      T       52 
V       66      D       53 
V       67      V       54 
P       68      T       55 
A       69      A       56 
F       70      D       57 
N       71      A       58 
T       72      A       59 
G       73      G       60 
T       74      K       61 
I       75      I       62 
T       76      T       63 
Q       77      A       64 
V       78      Q       65 
I       79      L       66 
K       80      K       67 
V       81      V       68 
L       82      H       69 
N       83      S       70 
P       84      S       71 
Q       85      F       72 
K       86      Q       73 
Q       87      A       74 
Q       88      V       75 
L       89      D       79 
R       90      G       80 
M       91      T       81 
R       92      P       82 
I       93      W       83 
K       94      G       84 
L       95      T       85 
T       96      V       86 
Y       97      N       87 
N       98      C       88 
H       99      K       89 
K       100     V       90 
G       101     V       91 
S       102     S       92 
A       103     C       93 
M       104     S       94 
Q       105     A       95 
D       106     G       96 
L       107     L       97 
A       108     G       98 
E       109     S       99 
N       112     D       100 
F       113     S       101 
P       114     G       102 
P       115     E       103 
Q       116     G       104 
S       117     A       105 
W       118     A       106 
Q       119     Q       107 
TER 
END 
