PFRMAT AL 
TARGET T0047 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0047" has a significant match 
REMARK pdb1mup      17.547     0.665   100.725  MAJOR URINARY PROTEIN COMPLEX WITH 2-(SEC-BUTYL) 
REMARK                                          SCOP: Beta; Lipocalins 
REMARK pdb1obp_A     9.817     0.396    50.007  MOLECULE: ODORANT-BINDING PROTEIN; 
REMARK                                          SCOP: Beta; Lipocalins 
REMARK pdb1epa_B     8.468     0.349    47.718  EPIDIDYMAL RETINOIC ACID-BINDING PROTEIN 
REMARK                                          SCOP: Beta; Lipocalins 
REMARK pdb1beb_A     6.479     0.279    19.997  MOLECULE: BETA-LACTOGLOBULIN; 
REMARK                                          SCOP: Beta; Lipocalins 
REMARK pdb1isc_A     4.246     0.202     7.925  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1ptf       3.520     0.176    15.854  HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN (HPR) 
REMARK                                          SCOP: A+B; Histidine-containing phosphocarrier proteins (HPr) 
REMARK pdb1pch       3.467     0.175    13.462  MOLECULE: PHOSPHOCARRIER PROTEIN; 
REMARK                                          SCOP: A+B; Histidine-containing phosphocarrier proteins (HPr) 
REMARK pdb1erw       3.456     0.174    11.051  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1amm       3.320     0.169    -4.706  MOLECULE: GAMMA B-CRYSTALLIN; 
REMARK                                          SCOP: 1-85: Beta; Crystallins/protein S 
REMARK                                          SCOP: 86-174: Beta; Crystallins/protein S 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0047        EEASSTRGNLDVAKLNGDWFSIVVASNKREKIEENGSMRVFMQHIDVLEN 
REMARK              .||:..  |||. || |:|  . |: .|||.#:|| |: ||:|.| : .: 
REMARK pdb1mup      EEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEN 
REMARK  
REMARK t0047        SLGFKFRIKENGECRELYLVAYKTPEDGEYFVEYDGGNTFTILKTDYDRY 
REMARK              :|#|::|.# ||:|.| . .|.: :.:| |.::||| #.|||.:.:|| : 
REMARK pdb1mup      SLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNF 
REMARK  
REMARK t0047        VMFHLINFKNGETFQLMVLYGRTKDLSSDIKEKFAKLCEAHGITRDNIID 
REMARK              |: :|.  .||||   |:|| |: ..:.:..|:::::.| ||| ||||   
REMARK pdb1mup      LMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIID 
REMARK  
REMARK t0047        LTKTDRCLQARG 
REMARK              : :|         
REMARK pdb1mup      LSNANRC..... 
REMARK  
PARENT 1mup 
E 1  E 5 
E 2  E 6 
A 3  A 7 
S 4  S 8 
S 5  S 9 
T 6  T 10 
R 7  G 11 
G 8  R 12 
N 9  N 13 
L 10  F 14 
D 11  N 15 
V 12  V 16 
A 13  E 17 
K 14  K 18 
L 15  I 19 
N 16  N 20 
G 17  G 21 
D 18  E 22 
W 19  W 23 
F 20  H 24 
S 21  T 25 
I 22  I 26 
V 23  I 27 
V 24  L 28 
A 25  A 29 
S 26  S 30 
N 27  D 31 
K 28  K 32 
R 29  R 33 
E 30  E 34 
K 31  K 35 
I 32  I 36 
E 33  E 37 
E 34  D 38 
N 35  N 39 
G 36  G 40 
S 37  N 41 
M 38  F 42 
R 39  R 43 
V 40  L 44 
F 41  F 45 
M 42  L 46 
Q 43  E 47 
H 44  Q 48 
I 45  I 49 
D 46  H 50 
V 47  V 51 
L 48  L 52 
E 49  E 53 
N 50  N 54 
S 51  S 55 
L 52  L 56 
G 53  V 57 
F 54  L 58 
K 55  K 59 
F 56  F 60 
R 57  H 61 
I 58  T 62 
K 59  V 63 
E 60  R 64 
N 61  D 65 
G 62  E 66 
E 63  E 67 
C 64  C 68 
R 65  S 69 
E 66  E 70 
L 67  L 71 
Y 68  S 72 
L 69  M 73 
V 70  V 74 
A 71  A 75 
Y 72  D 76 
K 73  K 77 
T 74  T 78 
P 75  E 79 
E 76  K 80 
D 77  A 81 
G 78  G 82 
E 79  E 83 
Y 80  Y 84 
F 81  S 85 
V 82  V 86 
E 83  T 87 
Y 84  Y 88 
D 85  D 89 
G 86  G 90 
G 87  F 91 
N 88  N 92 
T 89  T 93 
F 90  F 94 
T 91  T 95 
I 92  I 96 
L 93  P 97 
K 94  K 98 
T 95  T 99 
D 96  D 100 
Y 97  Y 101 
D 98  D 102 
R 99  N 103 
Y 100  F 104 
V 101  L 105 
M 102  M 106 
F 103  A 107 
H 104  H 108 
L 105  L 109 
I 106  I 110 
N 107  N 111 
F 108  E 112 
K 109  K 113 
N 110  D 114 
G 111  G 115 
E 112  E 116 
T 113  T 117 
F 114  F 118 
Q 115  Q 119 
L 116  L 120 
M 117  M 121 
V 118  G 122 
L 119  L 123 
Y 120  Y 124 
G 121  G 125 
R 122  R 126 
T 123  E 127 
K 124  P 128 
D 125  D 129 
L 126  L 130 
S 127  S 131 
S 128  S 132 
D 129  D 133 
I 130  I 134 
K 131  K 135 
E 132  E 136 
K 133  R 137 
F 134  F 138 
A 135  A 139 
K 136  Q 140 
L 137  L 141 
C 138  C 142 
E 139  E 143 
A 140  E 144 
H 141  H 145 
G 142  G 146 
I 143  I 147 
T 144  L 148 
R 145  R 149 
D 146  E 150 
N 147  N 151 
I 148  I 152 
I 149  I 153 
D 150  D 154 
L 151  L 155 
T 152  S 156 
K 153  N 157 
T 154  A 158 
D 155  N 159 
R 156  R 160 
C 157  C 161 
TER 
END 
