PFRMAT AL 
TARGET T0047 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_10% 
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and 
METHOD Nicholas 1997. "Classification of the Environment of 
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD 
METHOD This test uses our latest (unpublished) environment 
METHOD classifications and extentions. 
MODEL  1 
PARENT 1mup 
E    1 E    5 
E    2 E    6 
A    3 A    7 
S    4 S    8 
S    5 S    9 
T    6 T   10 
R    7 G   11 
G    8 R   12 
N    9 N   13 
L   10 F   14 
D   11 N   15 
V   12 V   16 
A   13 E   17 
K   14 K   18 
L   15 I   19 
N   16 N   20 
G   17 G   21 
D   18 E   22 
W   19 W   23 
F   20 H   24 
S   21 T   25 
I   22 I   26 
V   23 I   27 
V   24 L   28 
A   25 A   29 
S   26 S   30 
N   27 D   31 
K   28 K   32 
R   29 R   33 
E   30 E   34 
K   31 K   35 
I   32 I   36 
E   33 E   37 
E   34 D   38 
N   35 N   39 
G   36 G   40 
S   37 N   41 
M   38 F   42 
R   39 R   43 
V   40 L   44 
F   41 F   45 
M   42 L   46 
Q   43 E   47 
H   44 Q   48 
I   45 I   49 
D   46 H   50 
V   47 V   51 
L   48 L   52 
E   49 E   53 
N   50 N   54 
S   51 S   55 
L   52 L   56 
G   53 V   57 
F   54 L   58 
K   55 K   59 
F   56 F   60 
R   57 H   61 
I   58 T   62 
K   59 V   63 
E   60 R   64 
N   61 D   65 
G   62 E   66 
E   63 E   67 
C   64 C   68 
R   65 S   69 
E   66 E   70 
L   67 L   71 
Y   68 S   72 
L   69 M   73 
V   70 V   74 
A   71 A   75 
Y   72 D   76 
K   73 K   77 
T   74 T   78 
P   75 E   79 
E   76 K   80 
D   77 A   81 
G   78 G   82 
E   79 E   83 
Y   80 Y   84 
F   81 S   85 
V   82 V   86 
E   83 T   87 
Y   84 Y   88 
D   85 D   89 
G   86 G   90 
G   87 F   91 
N   88 N   92 
T   89 T   93 
F   90 F   94 
T   91 T   95 
I   92 I   96 
L   93 P   97 
K   94 K   98 
T   95 T   99 
D   96 D  100 
Y   97 Y  101 
D   98 D  102 
R   99 N  103 
Y  100 F  104 
V  101 L  105 
M  102 M  106 
F  103 A  107 
H  104 H  108 
L  105 L  109 
I  106 I  110 
N  107 N  111 
F  108 E  112 
K  109 K  113 
N  110 D  114 
G  111 G  115 
E  112 E  116 
T  113 T  117 
F  114 F  118 
Q  115 Q  119 
L  116 L  120 
M  117 M  121 
V  118 G  122 
L  119 L  123 
Y  120 Y  124 
G  121 G  125 
R  122 R  126 
T  123 E  127 
K  124 P  128 
D  125 D  129 
L  126 L  130 
S  127 S  131 
S  128 S  132 
D  129 D  133 
I  130 I  134 
K  131 K  135 
E  132 E  136 
K  133 R  137 
F  134 F  138 
A  135 A  139 
K  136 Q  140 
L  137 L  141 
C  138 C  142 
E  139 E  143 
A  140 E  144 
H  141 H  145 
G  142 G  146 
I  143 I  147 
T  144 L  148 
R  145 R  149 
D  146 E  150 
N  147 N  151 
I  148 I  152 
I  149 I  153 
D  150 D  154 
L  151 L  155 
T  152 S  156 
K  153 N  157 
T  154 A  158 
D  155 N  159 
R  156 R  160 
C  157 C  161 
TER 
END 
