PFRMAT AL 
TARGET T0048 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0048" has a significant match 
REMARK pdb1dcp_A     9.848     0.390    42.267  MOLECULE: DCOH; 
REMARK                                          SCOP: A+B; DCoH-like 
REMARK pdb1ith_A     4.802     0.216     5.767  HEMOGLOBIN (CYANOMET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1nfn       4.366     0.201     3.112  MOLECULE: APOLIPOPROTEIN E3; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1cpq       4.294     0.198     4.308  MOLECULE: CYTOCHROME C'; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1aac       4.213     0.195     8.514  MOLECULE: AMICYANIN; 
REMARK                                          SCOP: Beta; Cupredoxins 
REMARK pdb1rhg_A     4.180     0.194     9.864  GRANULOCYTE-COLONY STIMULATING FACTOR (R-HU-GCSF) 
REMARK                                          SCOP: Alpha; 4-helical cytokines 
REMARK pdb1maz       4.135     0.193     3.915  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb1occ_E     3.952     0.186     7.804  MOLECULE: CYTOCHROME C OXIDASE; 
REMARK                                          SCOP: Alpha; alpha-alpha superhelix 
REMARK pdb2fal       3.936     0.186     6.453  MYOGLOBIN (FERRIC) COMPLEX WITH CYANIDE 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb2trx_A     3.927     0.185     3.493  THIOREDOXIN 
REMARK                                          SCOP: A/B; Thioredoxin-like 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0048        MTALTQAHCEACRADAPHVSDEELPVLLRQIPDWNIEVRDGIMQLEKVYL 
REMARK                              |.:|:|: |  |.:|:. .|.: .|#  | :.|# 
REMARK pdb1dcp_A    ................HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFH 
REMARK  
REMARK t0048        FKNFKHALAFTNAVGEISEAEGHHPGLLTEWGKVTVTWWSHSIKGLHRND 
REMARK              |||:# :.||  ||  .  .:|| :#| .   .|||.| : .#|::|. . 
REMARK pdb1dcp_A    FKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERD 
REMARK  
REMARK t0048        FIMAARTDEVAKTAEGRK 
REMARK              |#||::  |:|.. |    
REMARK pdb1dcp_A    INLASFIEQVAVSMT... 
REMARK  
PARENT 1dcp_A 
P 17  H 6 
H 18  R 7 
V 19  L 8 
S 20  S 9 
D 21  A 10 
E 22  E 11 
E 23  E 12 
L 24  R 13 
P 25  D 14 
V 26  Q 15 
L 27  L 16 
L 28  L 17 
R 29  P 18 
Q 30  N 19 
I 31  L 20 
P 32  R 21 
D 33  A 22 
W 34  V 23 
N 35  G 24 
I 36  W 25 
E 37  N 26 
V 38  E 27 
R 39  L 28 
D 40  E 29 
G 41  G 30 
I 42  R 31 
M 43  D 32 
Q 44  A 33 
L 45  I 34 
E 46  F 35 
K 47  K 36 
V 48  Q 37 
Y 49  F 38 
L 50  H 39 
F 51  F 40 
K 52  K 41 
N 53  D 42 
F 54  F 43 
K 55  N 44 
H 56  R 45 
A 57  A 46 
L 58  F 47 
A 59  G 48 
F 60  F 49 
T 61  M 50 
N 62  T 51 
A 63  R 52 
V 64  V 53 
G 65  A 54 
E 66  L 55 
I 67  Q 56 
S 68  A 57 
E 69  E 58 
A 70  K 59 
E 71  L 60 
G 72  D 61 
H 73  H 62 
H 74  H 63 
P 75  P 64 
G 76  E 65 
L 77  W 66 
L 78  F 67 
T 79  N 68 
E 80  V 69 
W 81  Y 70 
G 82  N 71 
K 83  K 72 
V 84  V 73 
T 85  H 74 
V 86  I 75 
T 87  T 76 
W 88  L 77 
W 89  S 78 
S 90  T 79 
H 91  H 80 
S 92  E 81 
I 93  C 82 
K 94  A 83 
G 95  G 84 
L 96  L 85 
H 97  S 86 
R 98  E 87 
N 99  R 88 
D 100  D 89 
F 101  I 90 
I 102  N 91 
M 103  L 92 
A 104  A 93 
A 105  S 94 
R 106  F 95 
T 107  I 96 
D 108  E 97 
E 109  Q 98 
V 110  V 99 
A 111  A 100 
K 112  V 101 
T 113  S 102 
A 114  M 103 
E 115  T 104 
TER 
END 
