 
PFRMAT AL 
TARGET T0048 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1sdb_B 
M    1 G    8 
T    2 S    9 
A    3 H   10 
L    4 L   11 
T    5 V   12 
Q    6 E   13 
A    7 A   14 
H    8 L   15 
C    9 Y   16 
E   10 L   17 
A   11 V   18 
C   12 C   19 
R   13 G   20 
A   14 E   21 
D   15 R   22 
A   16 G   23 
P   17 F   24 
TER 
END 
