PFRMAT AL 
TARGET T0049 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 7/15/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0049" has a significant match 
REMARK pdb3pte      10.830     0.229    17.937  D-ALANYL-D-ALANINE CARBOXYPEPTIDASE/TRANSPEPTIDASE 
REMARK                                          SCOP: Multi; beta-Lactamase/D-ala carboxypeptidase 
REMARK pdb2blt_A     6.778     0.152    -4.578  BETA-LACTAMASE (E.C.3.5.2.6) (CEPHALOSPORINASE) 
REMARK                                          SCOP: Multi; beta-Lactamase/D-ala carboxypeptidase 
REMARK pdb1xyz_A     4.936     0.117   -13.532  MOLECULE: 1,4-BETA-D-XYLAN-XYLANOHYDROLASE; 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1isc_A     4.625     0.111   -12.983  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1mng_A     4.279     0.105    -7.547  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1kaz       3.628     0.092     4.069  MOLECULE: 70KD HEAT SHOCK COGNATE PROTEIN; 
REMARK                                          SCOP: 4-188: A/B; Ribonuclease H-like motif 
REMARK                                          SCOP: 189-381: A/B; Ribonuclease H-like motif 
REMARK pdb2chr       3.447     0.089   -38.953  CHLOROMUCONATE CYCLOISOMERASE (CMCI) (E.C.5.5.1.7) 
REMARK                                          SCOP: 127-370: A/B; beta/alpha (TIM)-barrel 
REMARK                                          SCOP: 1-126: A+B; N-terminal domain of enolase & muconate-lactonizing enzyme 
REMARK pdb1gsa       3.338     0.087   -17.753  MOLECULE: GLUTATHIONE SYNTHETASE; 
REMARK                                          SCOP: 1-122: A/B; Biotin carboxylase N-terminal domain-like 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0049        MTAASLDPTAFSLDAASL.AARLDAVFDQALRERRLVGAVAIVARHGEIL 
REMARK                           |  :.   :|::.: |.| |: |: |.| |#..|.:  
REMARK pdb3pte      ............ADLPAPDDTGLQAVL.HTALSQGAPGAMVRVDDNGTI. 
REMARK  
REMARK t0049        YRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGELALDAP 
REMARK              |. |:| .|.|:| |..#|  | . :    | |||||.|  .|.|#||:| 
REMARK pdb3pte      HQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDAS 
REMARK  
REMARK t0049        VTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYD.RLGI 
REMARK              |:::.|.: |       . |:||.|:.|:|||# :    |.|||. |: : 
REMARK pdb3pte      VNTYLPGLLP......DDRITVRQVMSHRSGLYDY....TNDMFAQTVPG 
REMARK  
REMARK t0049        SDGIDLRDFDLDENLRRLASAPLSFAPGSGWQYSLALDVL.GAVVERATG 
REMARK               : |.#. ||# |#|.:|.: |   .:|::|:.: . #:| .||:|::.| 
REMARK pdb3pte      FESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTG 
REMARK  
REMARK t0049        QPLAAAVDALVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEV 
REMARK              .|.::: :: ||:::|:.|  | .  |..:: ..#     :. :.      
REMARK pdb3pte      HSVATEYQNRIFTPLNLTDTFYVH.PDTVIPGTHA.....NGYLT..... 
REMARK  
REMARK t0049        PLPEGHGAAVRFAPSRVFEPGAYPSGGAG.MYGSADDVLRALEAIRANPG 
REMARK                ||  |.     | | |    ..:|  | ||:|.:.. |::.||   :  
REMARK pdb3pte      ..PDEAGGA....LVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSGQL 
REMARK  
REMARK t0049        FLPETLADAARRDQAGVGAETRGPGWGFGYLSAVLDDPAAAGTPQHAGTL 
REMARK              |#||::::|  : ..|   |.. .|.|| |..  |:|:  :    |: :. 
REMARK pdb3pte      MSAAQLAQMQQWTTVN...STQGYGLGLRRRD..LSCGISV....YGHTG 
REMARK  
REMARK t0049        QWGGVYGHSWFVDRALG.LSVLLLTNTAY.EGMSGPLTIALRDAVYAR. 
REMARK              . #|| # .|..:.  | ..| |:. | | | :..#| #||: ||  |  
REMARK pdb3pte      TVQGYYTYAFASKD..GKRSVTALANTSNNVNVLNTMARTLESAFCGKP 
REMARK  
PARENT 3pte 
L 13  A 1 
D 14  D 2 
A 15  L 3 
A 16  P 4 
S 17  A 5 
L 18  P 6 
A 19  D 8 
A 20  T 9 
R 21  G 10 
L 22  L 11 
D 23  Q 12 
A 24  A 13 
V 25  V 14 
F 26  L 15 
Q 28  H 16 
A 29  T 17 
L 30  A 18 
R 31  L 19 
E 32  S 20 
R 33  Q 21 
R 34  G 22 
L 35  A 23 
V 36  P 24 
G 37  G 25 
A 38  A 26 
V 39  M 27 
A 40  V 28 
I 41  R 29 
V 42  V 30 
A 43  D 31 
R 44  D 32 
H 45  N 33 
G 46  G 34 
E 47  T 35 
I 48  I 36 
Y 50  H 37 
R 51  Q 38 
R 52  L 39 
A 53  S 40 
Q 54  E 41 
G 55  G 42 
L 56  V 43 
A 57  A 44 
D 58  D 45 
R 59  R 46 
E 60  A 47 
A 61  T 48 
G 62  G 49 
R 63  R 50 
P 64  A 51 
M 65  I 52 
R 66  T 53 
E 67  T 54 
D 68  T 55 
T 69  D 56 
L 70  R 57 
F 71  F 58 
R 72  R 59 
L 73  V 60 
A 74  G 61 
S 75  S 62 
V 76  V 63 
T 77  T 64 
K 78  K 65 
P 79  S 66 
I 80  F 67 
V 81  S 68 
A 82  A 69 
L 83  V 70 
A 84  V 71 
V 85  L 72 
L 86  L 73 
R 87  Q 74 
L 88  L 75 
V 89  V 76 
A 90  D 77 
R 91  E 78 
G 92  G 79 
E 93  K 80 
L 94  L 81 
A 95  D 82 
L 96  L 83 
D 97  D 84 
A 98  A 85 
P 99  S 86 
V 100  V 87 
T 101  N 88 
R 102  T 89 
W 103  Y 90 
L 104  L 91 
P 105  P 92 
E 106  G 93 
F 107  L 94 
R 108  L 95 
P 109  P 96 
E 116  D 97 
P 117  D 98 
L 118  R 99 
V 119  I 100 
T 120  T 101 
I 121  V 102 
H 122  R 103 
H 123  Q 104 
L 124  V 105 
L 125  M 106 
T 126  S 107 
H 127  H 108 
T 128  R 109 
S 129  S 110 
G 130  G 111 
L 131  L 112 
G 132  Y 113 
Y 133  D 114 
W 134  Y 115 
A 139  T 116 
G 140  N 117 
S 141  D 118 
V 142  M 119 
Y 143  F 120 
D 144  A 121 
R 145  T 123 
L 146  V 124 
G 147  P 125 
I 148  G 126 
S 149  F 127 
D 150  E 128 
G 151  S 129 
I 152  V 130 
D 153  R 131 
L 154  N 132 
R 155  K 133 
D 156  V 134 
F 157  F 135 
D 158  S 136 
L 159  Y 137 
D 160  Q 138 
E 161  D 139 
N 162  L 140 
L 163  I 141 
R 164  T 142 
R 165  L 143 
L 166  S 144 
A 167  L 145 
S 168  K 146 
A 169  H 147 
P 170  G 148 
L 171  V 149 
S 172  T 150 
F 173  N 151 
A 174  A 152 
P 175  P 153 
G 176  G 154 
S 177  A 155 
G 178  A 156 
W 179  Y 157 
Q 180  S 158 
Y 181  Y 159 
S 182  S 160 
L 183  N 161 
A 184  T 162 
L 185  N 163 
D 186  F 164 
V 187  V 165 
L 188  V 166 
G 189  G 168 
A 190  M 169 
V 191  L 170 
V 192  I 171 
E 193  E 172 
R 194  K 173 
A 195  L 174 
T 196  T 175 
G 197  G 176 
Q 198  H 177 
P 199  S 178 
L 200  V 179 
A 201  A 180 
A 202  T 181 
A 203  E 182 
V 204  Y 183 
D 205  Q 184 
A 206  N 185 
L 207  R 186 
V 208  I 187 
A 209  F 188 
Q 210  T 189 
P 211  P 190 
L 212  L 191 
G 213  N 192 
M 214  L 193 
R 215  T 194 
D 216  D 195 
C 217  T 196 
G 218  F 197 
F 219  Y 198 
V 220  V 199 
S 221  H 200 
E 223  P 201 
P 224  D 202 
E 225  T 203 
R 226  V 204 
F 227  I 205 
A 228  P 206 
V 229  G 207 
P 230  T 208 
Y 231  H 209 
H 232  A 210 
P 238  N 211 
V 239  G 212 
R 240  Y 213 
M 241  L 214 
R 242  T 215 
P 250  P 216 
E 251  D 217 
G 252  E 218 
H 253  A 219 
G 254  G 220 
A 255  G 221 
A 256  A 222 
P 261  L 223 
S 262  V 224 
R 263  D 225 
V 264  S 226 
F 265  T 227 
E 266  E 228 
P 267  Q 229 
G 268  T 230 
A 269  V 231 
Y 270  S 232 
P 271  W 233 
S 272  A 234 
G 273  Q 235 
G 274  S 236 
A 275  A 237 
G 276  G 238 
M 277  V 240 
Y 278  I 241 
G 279  S 242 
S 280  S 243 
A 281  T 244 
D 282  Q 245 
D 283  D 246 
V 284  L 247 
L 285  D 248 
R 286  T 249 
A 287  F 250 
L 288  F 251 
E 289  S 252 
A 290  A 253 
I 291  L 254 
R 292  M 255 
A 293  S 256 
N 294  G 257 
P 295  Q 258 
G 296  L 259 
F 297  M 260 
L 298  S 261 
P 299  A 262 
E 300  A 263 
T 301  Q 264 
L 302  L 265 
A 303  A 266 
D 304  Q 267 
A 305  M 268 
A 306  Q 269 
R 307  Q 270 
R 308  W 271 
D 309  T 272 
Q 310  T 273 
A 311  V 274 
G 312  N 275 
E 316  S 276 
T 317  T 277 
R 318  Q 278 
G 319  G 279 
P 320  Y 280 
G 321  G 281 
W 322  L 282 
G 323  G 283 
F 324  L 284 
G 325  R 285 
Y 326  R 286 
L 327  R 287 
S 328  D 288 
L 331  L 289 
D 332  S 290 
D 333  C 291 
P 334  G 292 
A 335  I 293 
A 336  S 294 
A 337  V 295 
H 342  Y 296 
A 343  G 297 
G 344  H 298 
T 345  T 299 
L 346  G 300 
Q 347  T 301 
W 348  V 302 
G 349  Q 303 
G 350  G 304 
V 351  Y 305 
Y 352  Y 306 
G 353  T 307 
H 354  Y 308 
S 355  A 309 
W 356  F 310 
F 357  A 311 
V 358  S 312 
D 359  K 313 
R 360  D 314 
G 363  G 315 
L 364  R 317 
S 365  S 318 
V 366  V 319 
L 367  T 320 
L 368  A 321 
L 369  L 322 
T 370  A 323 
N 371  N 324 
T 372  T 325 
A 373  S 326 
Y 374  N 327 
E 375  V 329 
G 376  N 330 
M 377  V 331 
S 378  L 332 
G 379  N 333 
P 380  T 334 
L 381  M 335 
T 382  A 336 
I 383  R 337 
A 384  T 338 
L 385  L 339 
R 386  E 340 
D 387  S 341 
A 388  A 342 
V 389  F 343 
Y 390  C 344 
A 391  G 345 
R 392  K 346 
TER 
END 
