PFRMAT AL                                                                         
TARGET T0049                                                                      
REMARK ========================================================================== 
AUTHOR 5601-8785-5692                                                             
REMARK Gudrun Lange, HMR AG,                                                      
REMARK Heinz Mevissen, GMD,                                                       
REMARK Ralf Zimmer, GMD,                                                          
REMARK German National Research Center for Information Technology                 
REMARK Institute for Algorithms and Scientific Computing                          
REMARK ========================================================================== 
METHOD A reduced candidate list is produced via ToPLign [1]                       
METHOD sequence/profile alignments, 123D [2] and RDP [3].                         
METHOD The top scoring candidates from this list and the                          
METHOD corresponding refined alignments have been produced                        
METHOD with RDP [3] using newly derived modifications of                          
METHOD contact capacity [2] and pair interaction potentials.                      
METHOD References:                                                                
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer:    
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign",  
METHOD     GMD, 1994-98.                                                          
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:                     
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment     
METHOD     and Contact Capacity Potentials",                                      
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publishing Co., 
METHOD     1996, 53--72.                                                          
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:                       
METHOD     "Recursive Dynamic Programming for Adaptive Sequence                   
METHOD     and Structure Alignment",                                              
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.              
REMARK ========================================================================== 
MODEL  1                                                                          
PARENT 1CEG                                                                       
L  22    L    11                                                                  
D  23    Q    12                                                                  
A  24    A    13                                                                  
V  25    V    14                                                                  
F  26    L    15                                                                  
D  27    H    16                                                                  
Q  28    T    17                                                                  
A  29    A    18                                                                  
L  30    L    19                                                                  
R  31    S    20                                                                  
E  32    Q    21                                                                  
R  34    G    22                                                                  
L  35    A    23                                                                  
V  36    P    24                                                                  
G  37    G    25                                                                  
A  38    A    26                                                                  
V  39    M    27                                                                  
A  40    V    28                                                                  
I  41    R    29                                                                  
V  42    V    30                                                                  
A  43    D    31                                                                  
R  44    D    32                                                                  
H  45    N    33                                                                  
E  47    G    34                                                                  
I  48    T    35                                                                  
L  49    I    36                                                                  
Y  50    H    37                                                                  
R  51    Q    38                                                                  
R  52    L    39                                                                  
A  53    S    40                                                                  
Q  54    E    41                                                                  
G  55    G    42                                                                  
L  56    V    43                                                                  
A  57    A    44                                                                  
D  58    D    45                                                                  
R  59    R    46                                                                  
E  60    A    47                                                                  
A  61    T    48                                                                  
G  62    G    49                                                                  
R  63    R    50                                                                  
P  64    A    51                                                                  
M  65    I    52                                                                  
R  66    T    53                                                                  
E  67    T    54                                                                  
D  68    T    55                                                                  
T  69    D    56                                                                  
L  70    R    57                                                                  
F  71    F    58                                                                  
R  72    R    59                                                                  
L  73    V    60                                                                  
A  74    G    61                                                                  
S  75    S    62                                                                  
V  76    V    63                                                                  
T  77    T    64                                                                  
K  78    K    65                                                                  
P  79    S    66                                                                  
I  80    F    67                                                                  
V  81    S    68                                                                  
A  82    A    69                                                                  
L  83    V    70                                                                  
A  84    V    71                                                                  
V  85    L    72                                                                  
L  86    L    73                                                                  
R  87    Q    74                                                                  
L  88    L    75                                                                  
V  89    V    76                                                                  
A  90    D    77                                                                  
R  91    E    78                                                                  
G  92    G    79                                                                  
E  93    K    80                                                                  
L  94    L    81                                                                  
A  95    D    82                                                                  
L  96    L    83                                                                  
D  97    D    84                                                                  
A  98    A    85                                                                  
P  99    S    86                                                                  
V 100    V    87                                                                  
T 101    N    88                                                                  
R 102    T    89                                                                  
W 103    Y    90                                                                  
L 104    L    91                                                                  
P 105    P    92                                                                  
E 106    G    93                                                                  
F 107    L    94                                                                  
R 108    L    95                                                                  
P 109    P    96                                                                  
E 116    D    97                                                                  
P 117    D    98                                                                  
L 118    R    99                                                                  
V 119    I   100                                                                  
T 120    T   101                                                                  
I 121    V   102                                                                  
H 122    R   103                                                                  
H 123    Q   104                                                                  
L 124    V   105                                                                  
L 125    M   106                                                                  
T 126    S   107                                                                  
H 127    H   108                                                                  
T 128    R   109                                                                  
S 129    S   110                                                                  
G 130    G   111                                                                  
L 131    L   112                                                                  
G 132    Y   113                                                                  
Y 133    D   114                                                                  
W 134    Y   115                                                                  
F 157    F   135                                                                  
D 158    S   136                                                                  
L 159    Y   137                                                                  
D 160    Q   138                                                                  
E 161    D   139                                                                  
N 162    L   140                                                                  
L 163    I   141                                                                  
R 164    T   142                                                                  
R 165    L   143                                                                  
L 166    S   144                                                                  
A 167    L   145                                                                  
S 168    K   146                                                                  
A 169    H   147                                                                  
P 170    G   148                                                                  
L 171    V   149                                                                  
S 172    T   150                                                                  
F 173    N   151                                                                  
A 174    A   152                                                                  
P 175    P   153                                                                  
G 176    G   154                                                                  
S 177    A   155                                                                  
G 178    A   156                                                                  
W 179    Y   157                                                                  
Q 180    S   158                                                                  
Y 181    Y   159                                                                  
S 182    S   160                                                                  
L 183    T   162                                                                  
A 184    N   163                                                                  
L 185    F   164                                                                  
D 186    V   165                                                                  
V 187    V   166                                                                  
L 188    A   167                                                                  
G 189    G   168                                                                  
A 190    M   169                                                                  
V 191    L   170                                                                  
V 192    I   171                                                                  
E 193    E   172                                                                  
R 194    K   173                                                                  
A 195    L   174                                                                  
T 196    T   175                                                                  
G 197    G   176                                                                  
Q 198    H   177                                                                  
P 199    S   178                                                                  
L 200    V   179                                                                  
A 201    A   180                                                                  
A 202    T   181                                                                  
A 203    E   182                                                                  
V 204    Y   183                                                                  
D 205    Q   184                                                                  
A 206    N   185                                                                  
L 207    R   186                                                                  
V 208    I   187                                                                  
A 209    F   188                                                                  
Q 210    T   189                                                                  
P 211    P   190                                                                  
L 212    L   191                                                                  
G 213    N   192                                                                  
M 214    L   193                                                                  
R 215    T   194                                                                  
D 216    D   195                                                                  
C 217    T   196                                                                  
G 218    F   197                                                                  
F 219    Y   198                                                                  
V 220    V   199                                                                  
Q 235    H   200                                                                  
P 236    P   201                                                                  
E 237    D   202                                                                  
P 238    T   203                                                                  
V 239    V   204                                                                  
R 240    I   205                                                                  
M 241    P   206                                                                  
R 242    G   207                                                                  
D 243    T   208                                                                  
G 244    H   209                                                                  
I 245    A   210                                                                  
E 246    N   211                                                                  
V 247    G   212                                                                  
P 248    Y   213                                                                  
L 249    L   214                                                                  
P 250    T   215                                                                  
E 251    P   216                                                                  
G 252    D   217                                                                  
H 253    E   218                                                                  
G 254    A   219                                                                  
A 255    G   220                                                                  
A 256    G   221                                                                  
V 257    A   222                                                                  
R 258    L   223                                                                  
G 276    A   239                                                                  
M 277    V   240                                                                  
Y 278    I   241                                                                  
G 279    S   242                                                                  
S 280    S   243                                                                  
A 281    T   244                                                                  
D 282    Q   245                                                                  
D 283    D   246                                                                  
V 284    L   247                                                                  
L 285    D   248                                                                  
R 286    T   249                                                                  
A 287    F   250                                                                  
L 288    F   251                                                                  
E 289    S   252                                                                  
A 290    A   253                                                                  
I 291    L   254                                                                  
R 292    M   255                                                                  
A 293    S   256                                                                  
N 294    G   257                                                                  
P 295    Q   258                                                                  
G 296    L   259                                                                  
F 297    M   260                                                                  
T 301    S   261                                                                  
L 302    A   262                                                                  
A 303    A   263                                                                  
D 304    Q   264                                                                  
A 305    L   265                                                                  
A 306    A   266                                                                  
R 307    Q   267                                                                  
R 308    M   268                                                                  
D 309    Q   269                                                                  
Q 310    Q   270                                                                  
A 311    W   271                                                                  
G 312    T   272                                                                  
V 313    T   273                                                                  
G 314    V   274                                                                  
A 315    N   275                                                                  
E 316    S   276                                                                  
T 317    T   277                                                                  
R 318    Q   278                                                                  
G 319    G   279                                                                  
P 320    Y   280                                                                  
G 321    G   281                                                                  
W 322    L   282                                                                  
G 323    G   283                                                                  
F 324    L   284                                                                  
A 329    R   285                                                                  
V 330    R   286                                                                  
L 331    R   287                                                                  
D 332    D   288                                                                  
D 333    L   289                                                                  
P 334    S   290                                                                  
A 335    C   291                                                                  
A 336    G   292                                                                  
A 337    I   293                                                                  
G 338    S   294                                                                  
T 339    V   295                                                                  
P 340    Y   296                                                                  
Q 341    G   297                                                                  
H 342    H   298                                                                  
A 343    T   299                                                                  
G 344    G   300                                                                  
T 345    T   301                                                                  
L 346    V   302                                                                  
Q 347    Q   303                                                                  
G 350    G   304                                                                  
V 351    Y   305                                                                  
Y 352    Y   306                                                                  
G 353    T   307                                                                  
H 354    Y   308                                                                  
S 355    A   309                                                                  
W 356    F   310                                                                  
F 357    A   311                                                                  
V 358    S   312                                                                  
D 359    K   313                                                                  
R 360    D   314                                                                  
L 362    G   315                                                                  
G 363    K   316                                                                  
L 364    R   317                                                                  
S 365    S   318                                                                  
V 366    V   319                                                                  
L 367    T   320                                                                  
L 368    A   321                                                                  
L 369    L   322                                                                  
T 370    A   323                                                                  
N 371    N   324                                                                  
T 372    T   325                                                                  
A 373    S   326                                                                  
Y 374    N   327                                                                  
E 375    N   328                                                                  
G 376    N   330                                                                  
M 377    V   331                                                                  
S 378    L   332                                                                  
G 379    N   333                                                                  
P 380    T   334                                                                  
L 381    M   335                                                                  
T 382    A   336                                                                  
I 383    R   337                                                                  
A 384    T   338                                                                  
L 385    L   339                                                                  
R 386    E   340                                                                  
D 387    S   341                                                                  
A 388    A   342                                                                  
V 389    F   343                                                                  
Y 390    C   344                                                                  
A 391    G   345                                                                  
R 392    K   346                                                                  
TER                                                                               
END                                                                               
