PFRMAT AL 
TARGET t0053 
AUTHOR 4139-4764-1095 
METHOD 1) Secondary structure was predicted with PHD and Predator. 
METHOD 2) We used a hidden markov model that predicts SCOP 
METHOD    classification based on sequence and secondary structure. 
METHOD 3) Threader2 with secondary structure information gave very few hits, 
METHOD    but 2dri had a score significantly better than the others. 
METHOD    Some of the HMM hits very more or less compatible with the 
METHOD    one from threading, but not significantly.  
METHOD 4) Alignments indicate that the structure might contain rossman folds - 
METHOD    this is submitted as model2. 
MODEL 1 
PARENT 2dri 
K   2	K   1 
K   3	D   2 
A   4	T   3 
L   5	I   4 
L   6	A   5 
V   7	L   6 
V   8	V   7 
S   9	V   8 
F  10	S   9 
G  11	T  10 
T  12	L  11 
S  13	N  12 
Y  14	N  13 
T  17	P  14 
C  18	F  15 
E  19	F  16 
K  20	V  17 
N  21	S  18 
I  22	L  19 
V  23	K  20 
A  24	D  21 
C  25	G  22 
E  26	A  23 
R  27	Q  24 
D  28	K  25 
L  29	E  26 
A  30	A  27 
A  31	D  28 
S  32	K  29 
C  33	L  30 
P  34	G  31 
S  44	Y  32 
G  45	N  33 
M  46	L  34 
I  47	V  35 
I  48	V  36 
R  49	L  37 
K  50	D  38 
L  51	S  39 
R  52	Q  40 
Q  53	N  41 
D  58	N  42 
I  59	P  43 
D  60	A  44 
T  61	K  45 
P  62	E  46 
L  63	L  47 
Q  64	A  48 
A  65	N  49 
L  66	V  50 
Q  67	Q  51 
K  68	D  52 
L  69	L  53 
A  70	T  54 
A  71	V  55 
Q  72	R  56 
G  73	G  57 
Y  74	T  58 
Q  75	K  59 
D  76	I  60 
V  77	L  61 
A  78	L  62 
I  79	I  63 
Q  80	N  64 
S  81	P  65 
L  82	T  66 
H  83	D  67 
I  84	S  68 
I  85	D  69 
N  86	A  70 
G  87	V  71 
D  88	G  72 
E  89	N  73 
Y  90	A  74 
E  91	V  75 
K  92	K  76 
I  93	M  77 
V  94	A  78 
R  95	N  79 
E  96	Q  80 
V  97	A  81 
Q  98	I  86 
L  99	T  87 
L 100	L  88 
R 101	D  89 
P 102	R  90 
L 103	Q  91 
F 104	A  92 
T 105	T  93 
R 106	K  94 
L 107	G  95 
T 108	E  96 
L 109	V  97 
G 110	V  98 
V 111	S  99 
P 112	H 100 
L 113	I 101 
L 114	A 102 
S 115	S 103 
S 116	D 104 
Y 120	N 105 
V 121	V 106 
Q 122	L 107 
L 123	G 108 
M 124	G 109 
Q 125	K 110 
A 126	I 111 
L 127	A 112 
R 128	G 113 
Q 129	D 114 
Q 130	Y 115 
M 131	I 116 
P 132	A 117 
S 133	K 118 
L 134	K 119 
R 135	A 120 
Q 136	G 121 
T 137	E 122 
E 138	G 123 
K 139	K 125 
V 140	V 126 
V 141	I 127 
F 142	E 128 
M 143	L 129 
G 144	Q 130 
H 145	G 131 
G 146	A 133 
A 147	G 134 
S 148	T 135 
H 149	S 136 
H 150	A 137 
A 151	A 138 
F 152	R 139 
A 153	E 140 
A 154	R 141 
Y 155	G 142 
A 156	E 143 
C 157	G 144 
L 158	F 145 
D 159	Q 146 
H 160	Q 147 
M 161	A 148 
M 162	V 149 
T 163	A 150 
A 164	A 151 
Q 165	H 152 
R 166	K 153 
F 167	F 154 
P 168	N 155 
A 169	V 156 
R 170	L 157 
V 171	A 158 
G 172	S 159 
A 173	Q 160 
V 174	P 161 
E 175	A 162 
S 176	D 165 
Y 177	R 166 
P 178	I 167 
E 179	K 168 
V 180	G 169 
D 181	L 170 
I 182	N 171 
L 183	V 172 
I 184	M 173 
D 185	Q 174 
S 186	N 175 
L 187	L 176 
R 188	L 177 
D 189	T 178 
E 190	A 179 
G 191	H 180 
V 192	D 182 
T 193	V 183 
G 194	Q 184 
V 195	A 185 
H 196	V 186 
L 197	F 187 
M 198	A 188 
P 199	Q 189 
M 201	N 190 
L 202	D 191 
V 203	E 192 
A 204	M 193 
G 205	A 194 
D 206	L 195 
H 207	G 196 
A 208	A 197 
I 209	L 198 
N 210	R 199 
D 211	A 200 
M 212	L 201 
A 213	Q 202 
S 214	T 203 
D 215	A 204 
D 216	G 205 
G 217	K 206 
D 218	S 207 
R 223	D 208 
F 224	V 209 
N 225	M 210 
A 226	V 211 
A 227	V 212 
G 228	G 213 
I 229	F 214 
P 230	D 215 
A 231	G 216 
T 232	T 217 
P 233	P 218 
W 234	D 219 
L 235	G 220 
S 236	E 221 
G 237	K 222 
L 238	A 223 
G 239	V 224 
E 240	N 225 
N 241	D 226 
P 242	G 227 
A 243	K 228 
I 244	L 229 
R 245	A 230 
A 246	A 231 
M 247	T 232 
F 248	I 233 
V 249	A 234 
A 250	Q 235 
H 251	L 236 
L 252	P 237 
H 253	D 238 
Q 254	Q 239 
A 255	I 240 
L 256	G 241 
N 257	A 242 
M 258	K 243 
A 259	G 244 
V 260	V 245 
E 261	E 246 
E 262	T 247 
A 263	A 248 
A 264	D 249 
TER 
END 
