PFRMAT AL 
TARGET T0053 
AUTHOR 2746-8822-4809 
METHOD SEQFOLD(MSI) IMPLEMENTATION OF FOLD RECOGNITION 
METHOD BASED ON FISCHER AND EISENBERG PROT. SCI. 5, 943, 1996 
METHOD GLOBAL-LOCAL SEQUENCE ALIGNEMENT DRIVEN BY PREDICTED 
METHOD SECONDARY STRUCTURE  
METHOD CONSEQUENTLY - MODELS ARE ALWAYS BASED ON SINGLE SEQUENCE 
METHOD NOVEL SIGNIFICANCE ANALYSIS BASED ON RANDOM ALIGNMENTS  
MODEL 3 
PARENT 1edg 
M 1     M 1     
K 2     Y 2     
K 3     D 3     
A 4     A 4     
L 5     S 5     
L 6     L 6     
V 7     I 7     
V 8     P 8     
S 9     N 9     
F 10    L 10    
G 11    Q 11    
T 12    I 12    
S 13    P 13    
Y 14    Q 14    
H 15    K 15    
D 16    N 16    
T 17    I 17    
C 18    P 18    
E 19    N 19    
K 20    N 20    
N 21    D 21    
I 22    G 22    
V 23    M 23    
A 24    N 24    
C 25    F 25    
E 26    V 26    
R 27    K 27    
D 28    G 28    
L 29    L 29    
A 30    R 30    
A 31    L 31    
S 32    G 32    
C 33    W 33    
P 34    N 34    
D 35    L 35    
R 36    G 36    
D 37    N 37    
L 38    T 38    
F 39    F 39    
R 40    D 40    
A 41    A 41    
F 42    F 42    
T 43    N 43    
S 44    G 44    
G 45    T 45    
M 46    N 46    
I 47    I 47    
I 48    T 48    
R 49    N 49    
K 50    E 50    
L 51    L 51    
R 52    D 52    
Q 53    Y 53    
R 54    E 54    
D 55    T 55    
G 56    S 56    
I 57    W 57    
D 58    S 58    
REMARK TAR GAP 1 
I 59    I 60    
D 60    K 61    
T 61    T 62    
P 62    T 63    
L 63    K 64    
Q 64    Q 65    
A 65    M 66    
L 66    I 67    
Q 67    D 68    
K 68    A 69    
L 69    I 70    
A 70    K 71    
A 71    Q 72    
Q 72    K 73    
G 73    G 74    
Y 74    F 75    
Q 75    N 76    
D 76    T 77    
V 77    V 78    
A 78    R 79    
I 79    I 80    
Q 80    P 81    
REMARK TAR GAP 1 
S 81    S 83    
L 82    W 84    
H 83    H 85    
REMARK TAR GAP 1 
I 84    H 87    
I 85    V 88    
N 86    S 89    
G 87    G 90    
D 88    S 91    
E 89    D 92    
Y 90    Y 93    
REMARK TAR GAP 3 
E 91    D 97    
K 92    V 98    
I 93    W 99    
V 94    M 100   
R 95    N 101   
E 96    R 102   
V 97    V 103   
Q 98    Q 104   
L 99    E 105   
L 100   V 106   
R 101   V 107   
P 102   N 108   
L 103   Y 109   
F 104   C 110   
T 105   I 111   
R 106   D 112   
L 107   N 113   
T 108   K 114   
L 109   M 115   
G 110   Y 116   
V 111   V 117   
REMARK REF GAP 1 
L 113   I 118   
L 114   L 119   
S 115   N 120   
S 116   T 121   
H 117   H 122   
N 118   H 123   
D 119   D 124   
Y 120   V 125   
REMARK TAR GAP 9 
V 121   S 135   
Q 122   Q 136   
L 123   Y 137   
M 124   M 138   
Q 125   A 139   
A 126   S 140   
L 127   S 141   
R 128   K 142   
Q 129   K 143   
Q 130   Y 144   
M 131   I 145   
P 132   T 146   
S 133   S 147   
L 134   V 148   
REMARK TAR GAP 9 
R 135   N 158   
Q 136   Y 159   
T 137   D 160   
E 138   E 161   
K 139   H 162   
V 140   L 163   
V 141   I 164   
F 142   F 165   
REMARK TAR GAP 8 
M 143   V 174   
G 144   G 175   
H 145   H 176   
G 146   A 177   
REMARK TAR GAP 7 
A 147   T 185   
S 148   N 186   
H 149   S 187   
H 150   D 188   
A 151   V 189   
F 152   V 190   
A 153   D 191   
A 154   S 192   
Y 155   I 193   
A 156   N 194   
C 157   C 195   
L 158   I 196   
D 159   N 197   
H 160   Q 198   
M 161   L 199   
REMARK TAR GAP 13 
M 162   K 213   
T 163   N 214   
A 164   A 215   
Q 165   S 216   
R 166   R 217   
F 167   Y 218   
REMARK TAR GAP 3 
P 168   P 222   
A 169   G 223   
R 170   Y 224   
V 171   V 225   
REMARK TAR GAP 4 
G 172   G 230   
A 173   A 231   
V 174   T 232   
E 175   N 233   
S 176   D 234   
Y 177   Y 235   
P 178   F 236   
E 179   R 237   
V 180   M 238   
D 181   P 239   
I 182   N 240   
L 183   D 241   
I 184   I 242   
D 185   S 243   
S 186   G 244   
L 187   N 245   
R 188   N 246   
D 189   N 247   
E 190   K 248   
G 191   I 249   
V 192   I 250   
T 193   V 251   
G 194   S 252   
V 195   V 253   
H 196   H 254   
REMARK TAR GAP 6 
L 197   F 261   
M 198   A 262   
P 199   G 263   
L 200   L 264   
M 201   A 265   
L 202   M 266   
V 203   A 267   
A 204   D 268   
G 205   G 269   
D 206   G 270   
H 207   T 271   
A 208   N 272   
REMARK TAR GAP 3 
I 209   I 276   
N 210   N 277   
D 211   D 278   
M 212   S 279   
A 213   K 280   
S 214   D 281   
D 215   Q 282   
D 216   S 283   
G 217   E 284   
D 218   V 285   
S 219   T 286   
W 220   W 287   
K 221   F 288   
M 222   M 289   
REMARK TAR GAP 5 
R 223   K 295   
F 224   Y 296   
N 225   T 297   
A 226   S 298   
A 227   R 299   
G 228   G 300   
I 229   I 301   
P 230   P 302   
A 231   V 303   
T 232   I 304   
REMARK REF GAP 5 
L 238   I 305   
G 239   G 306   
E 240   E 307   
N 241   C 308   
P 242   G 309   
A 243   A 310   
I 244   V 311   
R 245   D 312   
A 246   K 313   
M 247   N 314   
F 248   N 315   
V 249   L 316   
A 250   K 317   
H 251   T 318   
L 252   R 319   
H 253   V 320   
Q 254   E 321   
A 255   Y 322   
L 256   M 323   
N 257   S 324   
M 258   Y 325   
A 259   Y 326   
V 260   V 327   
E 261   A 328   
E 262   Q 329   
A 263   A 330   
TER 
END 
