 
PFRMAT AL 
TARGET T0053 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 9/3/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,329 domain-based structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search for the N-term (1-130): 
REMARK Sequence "t0053a" has a significant match 
REMARK 1gsa_a        5.994     0.289    27.480  MOLECULE: GLUTATHIONE SYNTHETASE; 
REMARK                                          SCOP: 1-122: A/B; Biotin carboxylase N-terminal domain-like 
REMARK                                          SCOP: 123-314: A+B; ATP-grasp 
REMARK pdb1rro       5.130     0.256    20.981  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK 1ghsAb_A      4.919     0.248    15.523  1,3-BETA-GLUCANASE (E.C.3.2.1.39) 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1eca       4.012     0.212    10.659  HEMOGLOBIN (ERYTHROCRUORIN, AQUO MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1jaf_A     3.870     0.207     7.613  MOLECULE: CYTOCHROME C'; 
REMARK pdb2ccy_A     3.832     0.205    12.493  CYTOCHROME $C(PRIME) 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1aiu       3.651     0.198     5.892  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin fold 
REMARK pdb6nul       3.643     0.198     0.183  MOLECULE: FLAVODOXIN; 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1nfo       3.522     0.193    -6.112  MOLECULE: APOLIPOPROTEIN E2; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1rtp_1     3.499     0.192     1.390  ALPHA-PARVALBUMIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK 
REMARK Results from database search for the C-term (131 to end): 
REMARK Sequence "t0053b" has a significant match 
REMARK pdb1maz       5.736     0.213     3.827  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb1erw       5.494     0.206    13.604  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1ith_A     4.952     0.190     4.374  HEMOGLOBIN (CYANOMET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1myt       4.713     0.183     9.666  MYOGLOBIN (MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1bbh_A     4.605     0.180    14.021  CYTOCHROME C' 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1rhg_A     4.419     0.174    -3.624  GRANULOCYTE-COLONY STIMULATING FACTOR (R-HU-GCSF) 
REMARK                                          SCOP: Alpha; 4-helical cytokines 
REMARK pdb2ccy_A     4.172     0.167     2.420  CYTOCHROME $C(PRIME) 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1eca       3.981     0.161     3.979  HEMOGLOBIN (ERYTHROCRUORIN, AQUO MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1brs_D     3.816     0.156     6.037  BARNASE (G SPECIFIC ENDONUCLEASE) (E.C.3.1.27.-) COMPLEXED 
REMARK                                          SCOP: A/B; Barstar (barnase inhibitor) 
REMARK pdb1rro       3.739     0.154    -3.798  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0053a       MKKALLVVSFGTSYHDTCEKNIVACERDLA.ASCPDRDLFRAFT....SG 
REMARK                                :  || |#::|. ..:|..|.|::|.    || 
REMARK 1gsa_a       ..................MIKLGIVMDPIANINIKKDSSFAMLLEAQRRG 
REMARK  
REMARK t0053a       MIIR.....KLRQRDG.IDIDTPLQAL....QKLAAQ.GYQDVAIQSLHI 
REMARK                |      .||.:|| | .||:  #|    :||. . |.||  | |. | 
REMARK 1gsa_a       YELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDV 
REMARK  
REMARK t0053a       I....NGDEYEKIVREVQLLRPLFTRLTLGVPLLSSHN..DYVQLMQALR 
REMARK              |    ::.|#:|. .  |||:.|      ||:|||.    |  : ||:|: 
REMARK 1gsa_a       ILMRKDPPFDTEFIYATYILERAEEK...GTLIVNKPQSLRTGMLMDAIE 
REMARK  
REMARK t0053a       QQ.. 
REMARK              ::   
REMARK 1gsa_a       ARLQ 
REMARK  
REMARK Sequence alignment follows: 
REMARK t0053b       .................................................. 
REMARK                                                                 
REMARK pdb1maz      MSQSNRELVVDFLSYKLSQKGYSWSQFXXXXXXXXXXXXXXXXXXXXXXX 
REMARK  
REMARK t0053b       ............MPSLRQTEKVVFMGHGASHHAFAAYACLDHMMTA.... 
REMARK                                            .|.#:|...|: |.::     
REMARK pdb1maz      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPMAAVKQALREAGDEFELR 
REMARK  
REMARK t0053b       ..QRFPARVGAVE.....SYPEVDILIDSLRDEGVTGVHLMPLMLVAGDH 
REMARK                |..|.   .||     .|::||#|:|.| |:| .#  || ||.||    
REMARK pdb1maz      YRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGG.A 
REMARK  
REMARK t0053b       AINDMASDDGDS.WKMRFNAAGIPATPWLSG.LGENPAIRAMFVAHLHQA 
REMARK              || :||:|| |: |:  :: |  #|.  |:  | ||.:|..|. ..#    
REMARK pdb1maz      LCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG... 
REMARK  
REMARK t0053b       LNMAVEEAA 
REMARK                        
REMARK pdb1maz      ......... 
REMARK  
PARENT 1gsa 
E 19  M 1 
K 20  I 2 
N 21  K 3 
I 22  L 4 
V 23  G 5 
A 24  I 6 
C 25  V 7 
E 26  M 8 
R 27  D 9 
D 28  P 10 
L 29  I 11 
A 30  A 12 
A 31  I 14 
S 32  N 15 
C 33  I 16 
P 34  K 17 
D 35  K 18 
R 36  D 19 
D 37  S 20 
L 38  S 21 
F 39  F 22 
R 40  A 23 
A 41  M 24 
F 42  L 25 
T 43  L 26 
S 44  R 31 
G 45  G 32 
M 46  Y 33 
I 47  E 34 
I 48  L 35 
R 49  H 36 
K 50  D 42 
L 51  L 43 
R 52  Y 44 
Q 53  L 45 
R 54  I 46 
D 55  N 47 
G 56  G 48 
I 57  A 50 
D 58  R 51 
I 59  A 52 
D 60  H 53 
T 61  T 54 
P 62  R 55 
L 63  T 56 
Q 64  L 57 
A 65  N 58 
L 66  V 59 
Q 67  E 64 
K 68  E 65 
L 69  W 66 
A 70  F 67 
A 71  S 68 
Q 72  F 69 
G 73  G 71 
Y 74  E 72 
Q 75  Q 73 
D 76  D 74 
V 77  L 75 
A 78  P 76 
I 79  L 77 
Q 80  A 78 
S 81  D 79 
L 82  L 80 
H 83  D 81 
I 84  V 82 
I 85  I 83 
N 86  D 88 
G 87  P 89 
D 88  P 90 
E 89  F 91 
Y 90  D 92 
E 91  T 93 
K 92  E 94 
I 93  F 95 
V 94  I 96 
R 95  Y 97 
E 96  A 98 
V 97  T 99 
Q 98  Y 100 
L 99  I 101 
L 100  L 102 
R 101  E 103 
P 102  R 104 
L 103  A 105 
F 104  E 106 
T 105  E 107 
R 106  K 108 
G 110  G 109 
V 111  T 110 
P 112  L 111 
L 113  I 112 
L 114  V 113 
S 115  N 114 
S 116  K 115 
H 117  P 116 
N 118  Q 117 
D 119  R 120 
Y 120  T 302 
V 121  G 303 
Q 122  M 304 
L 123  L 305 
M 124  M 306 
Q 125  D 307 
A 126  A 308 
L 127  I 309 
R 128  E 310 
Q 129  A 311 
Q 130  R 312 
TER 
END 
