 
PFRMAT AL 
TARGET T0053 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 9/3/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,329 domain-based structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search for the N-term (1-130): 
REMARK Sequence "t0053a" has a significant match 
REMARK 1gsa_a        5.994     0.289    27.480  MOLECULE: GLUTATHIONE SYNTHETASE; 
REMARK                                          SCOP: 1-122: A/B; Biotin carboxylase N-terminal domain-like 
REMARK                                          SCOP: 123-314: A+B; ATP-grasp 
REMARK pdb1rro       5.130     0.256    20.981  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK 1ghsAb_A      4.919     0.248    15.523  1,3-BETA-GLUCANASE (E.C.3.2.1.39) 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1eca       4.012     0.212    10.659  HEMOGLOBIN (ERYTHROCRUORIN, AQUO MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1jaf_A     3.870     0.207     7.613  MOLECULE: CYTOCHROME C'; 
REMARK pdb2ccy_A     3.832     0.205    12.493  CYTOCHROME $C(PRIME) 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1aiu       3.651     0.198     5.892  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin fold 
REMARK pdb6nul       3.643     0.198     0.183  MOLECULE: FLAVODOXIN; 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1nfo       3.522     0.193    -6.112  MOLECULE: APOLIPOPROTEIN E2; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1rtp_1     3.499     0.192     1.390  ALPHA-PARVALBUMIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK 
REMARK Results from database search for the C-term (131 to end): 
REMARK Sequence "t0053b" has a significant match 
REMARK pdb1maz       5.736     0.213     3.827  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb1erw       5.494     0.206    13.604  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1ith_A     4.952     0.190     4.374  HEMOGLOBIN (CYANOMET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1myt       4.713     0.183     9.666  MYOGLOBIN (MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1bbh_A     4.605     0.180    14.021  CYTOCHROME C' 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1rhg_A     4.419     0.174    -3.624  GRANULOCYTE-COLONY STIMULATING FACTOR (R-HU-GCSF) 
REMARK                                          SCOP: Alpha; 4-helical cytokines 
REMARK pdb2ccy_A     4.172     0.167     2.420  CYTOCHROME $C(PRIME) 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1eca       3.981     0.161     3.979  HEMOGLOBIN (ERYTHROCRUORIN, AQUO MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1brs_D     3.816     0.156     6.037  BARNASE (G SPECIFIC ENDONUCLEASE) (E.C.3.1.27.-) COMPLEXED 
REMARK                                          SCOP: A/B; Barstar (barnase inhibitor) 
REMARK pdb1rro       3.739     0.154    -3.798  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0053a       MKKALLVVSFGTSYHDTCEKNIVACERDLA.ASCPDRDLFRAFT....SG 
REMARK                                :  || |#::|. ..:|..|.|::|.    || 
REMARK 1gsa_a       ..................MIKLGIVMDPIANINIKKDSSFAMLLEAQRRG 
REMARK  
REMARK t0053a       MIIR.....KLRQRDG.IDIDTPLQAL....QKLAAQ.GYQDVAIQSLHI 
REMARK                |      .||.:|| | .||:  #|    :||. . |.||  | |. | 
REMARK 1gsa_a       YELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDV 
REMARK  
REMARK t0053a       I....NGDEYEKIVREVQLLRPLFTRLTLGVPLLSSHN..DYVQLMQALR 
REMARK              |    ::.|#:|. .  |||:.|      ||:|||.    |  : ||:|: 
REMARK 1gsa_a       ILMRKDPPFDTEFIYATYILERAEEK...GTLIVNKPQSLRTGMLMDAIE 
REMARK  
REMARK t0053a       QQ.. 
REMARK              ::   
REMARK 1gsa_a       ARLQ 
REMARK  
REMARK Sequence alignment follows: 
REMARK t0053b       .................................................. 
REMARK                                                                 
REMARK pdb1maz      MSQSNRELVVDFLSYKLSQKGYSWSQFXXXXXXXXXXXXXXXXXXXXXXX 
REMARK  
REMARK t0053b       ............MPSLRQTEKVVFMGHGASHHAFAAYACLDHMMTA.... 
REMARK                                            .|.#:|...|: |.::     
REMARK pdb1maz      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPMAAVKQALREAGDEFELR 
REMARK  
REMARK t0053b       ..QRFPARVGAVE.....SYPEVDILIDSLRDEGVTGVHLMPLMLVAGDH 
REMARK                |..|.   .||     .|::||#|:|.| |:| .#  || ||.||    
REMARK pdb1maz      YRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGG.A 
REMARK  
REMARK t0053b       AINDMASDDGDS.WKMRFNAAGIPATPWLSG.LGENPAIRAMFVAHLHQA 
REMARK              || :||:|| |: |:  :: |  #|.  |:  | ||.:|..|. ..#    
REMARK pdb1maz      LCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG... 
REMARK  
REMARK t0053b       LNMAVEEAA 
REMARK                        
REMARK pdb1maz      ......... 
REMARK  
PARENT 1maz 
H 149  I 81 
H 150  P 82 
A 151  M 83 
F 152  A 84 
A 153  A 85 
A 154  V 86 
Y 155  K 87 
A 156  Q 88 
C 157  A 89 
L 158  L 90 
D 159  R 91 
H 160  E 92 
M 161  A 93 
M 162  G 94 
T 163  D 95 
A 164  E 96 
Q 165  R 103 
R 166  A 104 
F 167  F 105 
P 168  S 106 
A 169  D 107 
R 170  L 108 
V 171  T 109 
G 172  S 110 
A 173  Q 111 
V 174  L 112 
E 175  H 113 
S 176  A 119 
Y 177  Y 120 
P 178  Q 121 
E 179  S 122 
V 180  F 123 
D 181  E 124 
I 182  Q 125 
L 183  V 126 
I 184  V 127 
D 185  N 128 
S 186  E 129 
L 187  L 130 
R 188  F 131 
D 189  R 132 
E 190  D 133 
G 191  G 134 
V 192  V 135 
T 193  N 136 
G 194  W 137 
V 195  G 138 
H 196  R 139 
L 197  I 140 
M 198  V 141 
P 199  A 142 
L 200  F 143 
M 201  F 144 
L 202  S 145 
V 203  F 146 
A 204  G 147 
G 205  G 148 
H 207  A 149 
A 208  L 150 
I 209  C 151 
N 210  V 152 
D 211  E 153 
M 212  S 154 
A 213  V 155 
S 214  D 156 
D 215  K 157 
D 216  E 158 
G 217  M 159 
D 218  Q 160 
S 219  V 161 
W 220  V 163 
K 221  S 164 
M 222  R 165 
R 223  I 166 
F 224  A 167 
N 225  A 168 
A 226  W 169 
A 227  M 170 
G 228  A 171 
I 229  T 172 
P 230  Y 173 
A 231  L 174 
T 232  N 175 
P 233  D 176 
W 234  H 177 
L 235  L 178 
S 236  E 179 
G 237  P 180 
L 238  I 182 
G 239  Q 183 
E 240  E 184 
N 241  N 185 
P 242  G 186 
A 243  G 187 
I 244  W 188 
R 245  D 189 
A 246  T 190 
M 247  F 191 
F 248  V 192 
V 249  E 193 
A 250  L 194 
H 251  Y 195 
L 252  G 196 
TER 
END 
