 
PFRMAT AL 
TARGET T0053 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using target 
METHOD sequence and PAM250. Sequence was split into 2 halfs (res 
METHOD 1-150,100-264) and the best macth for each half was selected 
REMARK 
REMARK Search results: 
REMARK  Profile : t0053_nt.seqprf 
REMARK  alignment method = FIT_PRF 
REMARK          Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1adeA               +   5.69   5.64  431. ! Resolution=2.00  431 residues MOL_ID: 1; 
REMARK pdb90:1gox                +   4.41   4.63  351. !  Resolution=2.00  351 residues GLYCOLATE OXIDASE (E.C.1.1.3.1) 
REMARK pdb90:5pal                +   4.22   4.48  109. !  Resolution=1.54  109 residues PARVALBUMIN (ALPHA LINEAGE) 
REMARK 
REMARK  Profile : t0053_ct.seqprf 
REMARK  alignment method = FIT_PRF 
REMARK          Name               ZScore Score Length   Documentation .. 
REMARK pdb90:2masA               +   6.22   5.89  313. ! Resolution=2.30  313 residues MOL_ID: 1; 
REMARK pdb90:1pysB               +   5.58   5.40  785. ! Resolution=2.90  785 residues MOL_ID: 1; 
REMARK pdb90:1dik                +   4.84   4.83  869. !  Resolution=2.30  869 residues MOL_ID: 1; 
REMARK 
REMARK Alignments: 
REMARK    
REMARK   t0053.pep                  1 MKKALLV.V.SFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMII 
REMARK   1ADEA                     94 RERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVAR 
REMARK      
REMARK   t0053.pep                 49 RKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLHIINGDEYEKIVREVQ 
REMARK   1ADEA                    144 RGLRVGDLFDKETFAEKLKEVM.E.YHNFQLVNYYKAEAVDYQKVLDDTM 
REMARK      
REMARK   t0053.pep                 99 LLRPLFTRLTLGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFMGHGAS 
REMARK   1ADEA                    192 AVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSS 
REMARK      
REMARK   t0053.pep                149 HH 
REMARK   1ADEA                    242 NT 
REMARK      
REMARK    
REMARK t0053.pep                151 AFAAYACLDHMMTAQRFPARVGAVESYPEVDILIDSLRDEGVTGVHLMPL 
REMARK 2MASA                     10 ...........................PGLDDAVAILLAHGNPEIELLAI 
REMARK    
REMARK t0053.pep                201 MLVAGDHAINDMASDDGDSWKMRFNAAGIPATPWLSGLGENPAIRAMFVA 
REMARK 2MASA                     33 TTVVGNQTLAKVTRNA....QLVADIAGITGVPIAAGCDKPLVRKIMTAG 
REMARK    
REMARK t0053.pep                251 HLHQALNMAVEEAA 
REMARK 2MASA                     79 HIHGESGMGT.... 
REMARK    
MODEL 1  
PARENT 2MASA 
R 170    K   3 
V 171    K   4 
G 172    I   5 
A 173    I   6 
V 174    L   7 
E 175    D   8 
S 176    C   9 
Y 177    D  10 
P 178    P  11 
E 179    G  12 
V 180    L  13 
D 181    D  14 
I 182    D  15 
L 183    A  16 
I 184    V  17 
D 185    A  18 
S 186    I  19 
L 187    L  20 
R 188    L  21 
D 189    A  22 
E 190    H  23 
G 191    G  24 
V 192    N  25 
T 193    P  26 
G 194    E  27 
V 195    I  28 
H 196    E  29 
L 197    L  30 
M 198    L  31 
P 199    A  32 
L 200    I  33 
M 201    T  34 
L 202    T  35 
V 203    V  36 
A 204    V  37 
G 205    G  38 
D 206    N  39 
H 207    Q  40 
A 208    T  41 
I 209    L  42 
N 210    A  43 
D 211    K  44 
M 212    V  45 
A 213    T  46 
S 214    R  47 
D 218    N  48 
S 219    A  49 
K 221    Q  50 
M 222    L  51 
R 223    V  52 
F 224    A  53 
N 225    D  54 
A 226    I  55 
A 227    A  56 
G 228    G  57 
I 229    I  58 
P 230    T  59 
A 231    G  60 
T 232    V  61 
P 233    P  62 
W 234    I  63 
L 235    A  64 
S 236    A  65 
G 237    G  66 
L 238    C  67 
G 239    D  68 
E 240    K  69 
N 241    P  70 
P 242    L  71 
A 243    V  72 
I 244    R  73 
R 245    K  74 
A 246    I  75 
M 247    M  76 
F 248    T  77 
V 249    A  78 
A 250    G  79 
H 251    H  80 
L 252    I  81 
H 253    H  82 
Q 254    G  83 
A 255    E  84 
L 256    S  85 
N 257    G  86 
M 258    M  87 
A 259    G  88 
V 260    T  89 
E 261    V  90 
E 262    A  91 
A 263    Y  92 
A 264    P  93 
TER 
END 
