 
PFRMAT AL 
TARGET T0053 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: 1aph: BS_30_25% 
REMARK Matrix Used: 1ubw: BS_90_10%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1aph_B 
T   12 F    1 
S   13 V    2 
Y   14 N    3 
H   15 Q    4 
D   16 H    5 
T   17 L    6 
C   18 C    7 
E   19 G    8 
K   20 S    9 
N   21 H   10 
I   22 L   11 
V   23 V   12 
A   24 E   13 
C   25 A   14 
L   29 L   15 
A   30 Y   16 
A   31 L   17 
S   32 V   18 
C   33 C   19 
P   34 G   20 
D   35 E   21 
R   36 R   22 
D   37 G   23 
L   38 F   24 
F   39 F   25 
R   40 Y   26 
A   41 T   27 
F   42 P   28 
T   43 K   29 
S   44 A   30 
TER 
END 
