PFRMAT AL 
TARGET T0054 
AUTHOR 4438-1214-3249 
METHOD H3P2 method (Rice and Eisenberg) gave two Zn-containing peptidases 
METHOD (similar function to target) high on the list.  Neither had reasonable 
METHOD alignments for the PDB residues that coordinate Zn, but the one with 
METHOD closer possible ligands is listed as model 1, the other as model 2. 
MODEL 1 
PARENT 1kap_P 
G 14 G 1 
R 16 R 2 
W 17 S 3 
D 18 D 4 
A 19 A 5 
K 20 Q 8 
Y 21 V 9 
A 22 D 10 
T 23 N 11 
W 24 F 12 
D 25 L 13 
N 26 H 14 
F 27 A 15 
T 28 Y 16 
G 29 A 17 
K 30 R 18 
P 31 G 19 
V 32 G 20 
D 33 D 21 
G 34 E 22 
E 36 L 23 
V 37 V 24 
N 38 H 27 
R 39 P 28 
V 41 S 29 
G 42 Y 30 
T 43 T 31 
Y 44 V 32 
E 45 D 33 
L 46 A 35 
A 47 A 36 
E 48 E 37 
S 49 Q 38 
L 50 I 39 
L 51 L 40 
K 52 R 41 
A 53 E 42 
K 54 Q 43 
E 55 S 45 
L 56 W 46 
A 57 Q 47 
A 58 K 48 
T 59 A 49 
Q 60 P 50 
G 61 G 51 
Y 62 S 53 
G 63 V 54 
L 64 L 55 
L 65 L 57 
L 66 S 60 
W 67 F 61 
G 69 L 62 
Y 70 T 63 
R 71 K 64 
P 72 P 65 
K 73 N 66 
R 74 D 67 
A 75 F 68 
V 76 F 69 
N 77 N 70 
C 78 T 71 
M 80 P 72 
W 82 W 73 
A 83 K 74 
A 84 Y 75 
Q 85 V 76 
P 86 S 77 
E 87 D 78 
N 88 Y 80 
N 89 S 81 
L 90 L 82 
T 91 G 83 
K 92 K 84 
E 93 F 85 
S 94 S 86 
Y 95 A 87 
Y 96 F 88 
P 97 S 89 
N 98 Q 95 
I 99 A 96 
D 100 K 97 
R 101 L 98 
T 102 S 99 
E 103 Q 101 
M 104 S 102 
I 105 W 103 
S 106 S 104 
K 107 D 105 
G 108 V 106 
Y 109 T 107 
V 110 I 109 
A 111 H 110 
S 112 V 112 
K 113 D 113 
S 114 A 114 
S 115 G 115 
H 116 G 117 
S 117 D 118 
R 118 Q 119 
G 119 G 120 
S 120 D 121 
I 122 L 122 
D 123 T 123 
L 124 F 124 
T 125 G 125 
L 126 N 126 
Y 127 F 127 
R 128 S 128 
L 129 S 129 
D 130 S 130 
T 131 V 131 
G 132 G 132 
E 133 A 135 
L 134 F 136 
V 135 L 139 
P 136 P 140 
M 137 V 142 
G 138 P 143 
S 139 D 144 
R 140 A 145 
F 141 L 146 
D 142 K 147 
F 143 G 148 
M 144 S 150 
D 145 I 154 
E 146 N 155 
R 147 S 156 
S 148 S 157 
H 149 Y 158 
H 150 S 159 
A 151 A 160 
A 152 N 161 
N 153 V 162 
G 154 N 163 
I 155 P 164 
S 156 N 166 
C 157 G 167 
N 158 N 168 
E 159 Y 169 
A 160 G 170 
Q 161 R 171 
N 162 Q 172 
R 163 T 173 
R 164 L 174 
R 165 T 175 
L 166 H 176 
R 167 E 177 
S 168 I 178 
I 169 G 179 
M 170 H 180 
E 171 T 181 
N 172 L 182 
G 174 G 183 
F 175 L 184 
E 176 S 185 
A 177 H 186 
Y 178 P 187 
S 179 G 188 
H 184 D 189 
Y 185 Y 190 
V 186 A 192 
L 187 G 193 
R 188 E 194 
D 189 G 195 
E 190 D 196 
P 191 P 197 
Y 192 Y 199 
P 193 A 200 
N 194 D 201 
S 195 T 203 
Y 196 Y 204 
F 197 E 206 
D 198 D 207 
F 199 T 208 
P 200 R 209 
V 201 A 210 
K 202 Y 211 
TER 
END 
