PFRMAT AL 
TARGET T0054 
AUTHOR 7169-6295-1599 
METHOD The structure of VANX was predicted to be similar with 
METHOD ZN DD-peptidase(PDB code 1lbu) or N-terminal domain of sonic 
METHOD hedgehog protein(PDB code 1vhh) fold by McCafferty et al. 
METHOD (Biochemistry 1997) according to the mutagenesis to identify 
METHOD the Zn binding sites and motif search. 
METHOD Their result appears promising, because these structure 
METHOD coincide with the literature of structural submitters: 
METHOD they have anti-parallel beta-sheets and Zn binding site. 
METHOD So we asked whether our method support the results or not. 
METHOD Among several trials, the forward folding search by VANX sequence 
METHOD with 20 residues of deletion(speculated as gaps) was found to be 
METHOD weakly compatible with 1vhh structure. 
MODEL 3 
PARENT 1VHH 
K  20 K  39 
Y  21 L  40 
A  22 T  41 
T  23 P  42 
W  24 L  43 
D  25 A  44 
N  26 Y  45 
F  27 K  46 
T  28 Q  47 
G  29 F  48 
K  30 I  49 
P  31 P  50 
V  32 N  51 
D  33 V  52 
G  34 A  53 
Y  35 E  54 
E  36 K  55 
V  37 T  56 
N  38 L  57 
R  39 G  58 
I  40 A  59 
V  41 S  60 
G  42 G  61 
T  43 R  62 
Y  44 Y  63 
E  45 E  64 
L  46 G  65 
A  47 K  66 
E  48 I  67 
S  49 T  68 
L  50 R  69 
L  51 N  70 
K  52 S  71 
A  53 E  72 
K  54 R  73 
E  55 F  74 
L  56 K  75 
A  57 E  76 
A  58 L  77 
T  59 T  78 
Q  60 P  79 
G  61 N  80 
Y  62 Y  81 
G  63 N  82 
L  64 P  83 
L  65 I  85 
L  66 I  86 
W  67 F  87 
D  68 K  88 
G  69 D  89 
Y  70 E  90 
R  71 E  91 
P  72 N  92 
K  73 T  93 
R  74 G  94 
A  75 A  95 
V  76 D  96 
N  77 R  97 
C  78 L  98 
F  79 M  99 
M  80 T 100 
Q  81 Q 101 
W  82 R 102 
A  83 C 103 
A  84 K 104 
Q  85 D 105 
P  86 K 106 
E  87 L 107 
N  88 N 108 
N  89 A 109 
L  90 L 110 
T  91 A 111 
K  92 I 112 
E  93 S 113 
S  94 N 116 
Y  95 Q 117 
Y  96 W 118 
P  97 P 119 
N  98 G 120 
I  99 V 121 
D 100 K 122 
R 101 L 123 
T 102 R 124 
E 103 V 125 
M 104 T 126 
I 105 E 127 
S 106 E 131 
K 107 D 132 
G 108 G 133 
Y 109 H 134 
V 110 H 135 
A 111 S 136 
S 112 E 137 
K 113 E 138 
S 114 S 139 
S 115 L 140 
H 116 H 141 
S 117 Y 142 
R 118 E 143 
G 119 G 144 
S 120 R 145 
A 121 A 146 
I 122 V 147 
D 123 D 148 
L 124 I 149 
T 125 T 150 
L 126 T 151 
Y 127 S 152 
R 128 D 153 
L 129 R 154 
D 130 D 155 
T 131 R 156 
G 132 S 157 
E 133 K 158 
L 134 Y 159 
V 135 G 160 
P 136 M 161 
M 137 L 162 
G 138 A 163 
R 165 R 164 
L 166 L 165 
R 167 A 166 
S 168 V 167 
I 169 E 168 
M 170 A 169 
E 171 G 170 
N 172 F 171 
S 173 D 172 
G 174 W 173 
F 175 V 174 
E 176 Y 175 
A 177 Y 176 
Y 178 E 177 
S 179 S 178 
L 180 K 179 
E 181 A 180 
W 182 H 181 
W 183 I 182 
H 184 H 183 
Y 185 C 184 
V 186 S 185 
L 187 V 186 
R 188 K 187 
D 189 A 188 
E 190 E 189 
P 191 N 190 
Y 192 S 191 
P 193 V 192 
N 194 A 193 
S 195 A 194 
Y 196 K 195 
TER 
END 
