PFRMAT AL 
TARGET T0055 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25% 
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and 
METHOD Nicholas 1997. "Classification of the Environment of 
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD 
METHOD This test uses our latest (unpublished) environment 
METHOD classifications and extentions. 
MODEL  3 
PARENT 1esl 
Y    3 W    1 
E    4 S    2 
I    5 Y    3 
L    6 N    4 
F    7 T    5 
S    8 S    6 
D    9 T    7 
E   10 E    8 
T   11 A    9 
M   12 M   10 
N   13 T   11 
Y   14 Y   12 
A   15 D   13 
D   16 E   14 
A   17 A   15 
G   18 S   16 
T   19 A   17 
Y   20 Y   18 
C   21 C   19 
Q   22 Q   20 
S   23 Q   21 
R   24 R   22 
G   25 Y   23 
M   26 T   24 
A   27 H   25 
L   28 L   26 
V   29 V   27 
A   32 A   28 
M   33 I   29 
R   34 Q   30 
D   35 N   31 
S   36 K   32 
T   37 E   33 
M   38 E   34 
V   39 I   35 
K   40 E   36 
A   41 Y   37 
I   42 L   38 
L   43 N   39 
A   44 S   40 
F   45 I   41 
T   46 L   42 
E   47 S   43 
V   48 Y   44 
K   49 S   45 
G   50 P   46 
H   51 S   47 
D   52 Y   48 
Y   53 Y   49 
W   54 W   50 
V   55 I   51 
G   56 G   52 
A   57 V   56 
D   58 N   57 
N   59 N   58 
N   66 V   59 
F   67 W   60 
L   68 V   61 
W   69 W   62 
N   70 V   63 
D   71 T   65 
G   72 Q   66 
V   73 K   67 
S   74 P   68 
L   75 L   69 
P   76 T   70 
T   77 E   71 
D   78 E   72 
S   79 A   73 
D   80 K   74 
L   81 N   75 
W   82 W   76 
S   83 A   77 
P   84 P   78 
N   85 G   79 
E   86 E   80 
P   87 P   81 
S   88 N   82 
N   89 N   83 
P   90 R   84 
Q   91 Q   85 
S   92 K   86 
W   93 D   87 
Q   94 E   88 
L   95 D   89 
C   96 C   90 
V   97 V   91 
Q   98 E   92 
I   99 I   93 
W  100 Y   94 
S  101 I   95 
K  102 K   96 
Y  103 R   97 
N  104 E   98 
L  105 K   99 
L  106 D  100 
D  107 V  101 
D  108 D  106 
V  109 E  107 
G  110 R  108 
C  111 C  109 
G  112 S  110 
G  113 K  111 
A  114 K  112 
R  115 K  113 
R  116 L  114 
V  117 A  115 
I  118 L  116 
C  119 C  117 
L  123 Y  118 
D  124 T  119 
D  125 A  120 
TER 
END 
