PFRMAT AL 
TARGET T0056 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0056" has a significant match 
REMARK pdb1rro       6.737     0.292    15.268  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1brs_D     5.172     0.236     5.885  BARNASE (G SPECIFIC ENDONUCLEASE) (E.C.3.1.27.-) COMPLEXED 
REMARK                                          SCOP: A/B; Barstar (barnase inhibitor) 
REMARK pdb1nfn       5.096     0.233    11.207  MOLECULE: APOLIPOPROTEIN E3; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb5pal       4.763     0.221    10.263  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1cei       4.427     0.209     7.157  MOLECULE: COLICIN E7 IMMUNITY PROTEIN; 
REMARK                                          SCOP: Alpha; Acyl carrier protein 
REMARK pdb1maz       4.000     0.193    -5.026  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb1nkl       3.978     0.193     2.034  MOLECULE: NK-LYSIN; 
REMARK                                          SCOP: Alpha; Saposin 
REMARK pdb1dcp_A     3.944     0.191    11.748  MOLECULE: DCOH; 
REMARK                                          SCOP: A+B; DCoH-like 
REMARK pdb1eca       3.929     0.191     6.446  HEMOGLOBIN (ERYTHROCRUORIN, AQUO MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1thx       3.806     0.186     8.004  MOLECULE: THIOREDOXIN; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0056        .................MKVPPHSIEAEQSV..LGGLMLDNERWDDVAER 
REMARK                               :| |||.|:||: |  ||   .: |.| .|.|: 
REMARK pdb1rro      SITDILSAEDIAAALQECQ.DPDTFEPQKFFQTSGLSKMSASQVKDIFRF 
REMARK  
REMARK t0056        VVADD...FYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVG 
REMARK              | #||   | ..   .|| ||..   . |  ..  | |.: |||  :.|. 
REMARK pdb1rro      IDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGD.GKIG 
REMARK  
REMARK t0056        GFAYLAELSKNTPSAANISAYADIVRERAVVREMIS 
REMARK                :|| || .:                          
REMARK pdb1rro      .ADEFQEMVHS......................... 
REMARK  
PARENT 1rro 
M 23  C 18 
K 24  Q 19 
P 26  D 20 
P 27  P 21 
H 28  D 22 
S 29  T 23 
I 30  F 24 
E 31  E 25 
A 32  P 26 
E 33  Q 27 
Q 34  K 28 
S 35  F 29 
V 36  F 30 
L 37  S 33 
G 38  G 34 
G 39  L 35 
L 40  S 36 
M 41  K 37 
L 42  M 38 
D 43  S 39 
N 44  A 40 
E 45  S 41 
R 46  Q 42 
W 47  V 43 
D 48  K 44 
D 49  D 45 
V 50  I 46 
A 51  F 47 
E 52  R 48 
R 53  F 49 
V 54  I 50 
V 55  D 51 
A 56  N 52 
D 57  D 53 
D 58  Q 54 
F 59  L 58 
Y 60  D 59 
T 61  G 60 
R 62  D 61 
P 63  E 62 
H 64  L 63 
R 65  K 64 
H 66  Y 65 
I 67  F 66 
F 68  L 67 
T 69  Q 68 
E 70  K 69 
M 71  F 70 
A 72  Q 71 
R 73  S 72 
L 74  D 73 
Q 75  A 74 
E 76  R 75 
S 77  E 76 
G 78  L 77 
S 79  T 78 
P 80  E 79 
I 81  S 80 
D 82  E 81 
L 83  T 82 
I 84  K 83 
T 85  S 84 
L 86  L 85 
A 87  M 86 
E 88  D 87 
S 89  A 88 
L 90  A 89 
E 91  D 90 
R 92  N 91 
Q 93  D 92 
G 94  G 93 
Q 95  D 94 
D 97  G 95 
S 98  K 96 
V 99  I 97 
G 100  G 98 
F 102  A 99 
A 103  D 100 
Y 104  E 101 
L 105  F 102 
A 106  Q 103 
E 107  E 104 
L 108  M 105 
S 109  V 106 
K 110  H 107 
N 111  S 108 
TER 
END 
