PFRMAT AL 
TARGET T0056 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK t0056.pep                  2 KVPPHSIEAEQSVLGGLMLDNER...WDDVAERVVADDFYTRPHRHIF 
REMARK GP:ECODNABA_1             25 KVPPHSIEAEQSVLGGLMLDNER...WDDVAERVVADDFYTRPHRHIF 
REMARK SW:DNAC_BACSU              8 RLPPQNIEAEQAVLGAIFLQPSA...LTLASEVLIPDDFYRMSHQKIY 
REMARK SW:DNAB_ECOLI             25 KVPPHSIEAEQSVLGGLMLDNER...WDDVAERVVADDFYTRPHRHIF 
REMARK PIR:A32011                24 KVPPHSIEAEQSVLGGLMLDNER...WDDVAERVVAEDFYTRPHRHIF 
REMARK SW:DNAB_SALTY             25 KVPPHSIEAEQSVLGGLMLDNER...WDDVAERVVAEDFYTRPHRHIF 
REMARK SW:DNAB_MYCLE             25 ..PPQDLAAEQSVLGGMLLSKDA...IADVLERLRSGDFYRPAHQNVY 
REMARK SW:DNAB_MYCTU             24 ..PPQDLAAEQSVLGGMLLSKDA...IADVLERLRPGDFYRPAHQNVY 
REMARK GP:MTCY21D4_19            24 ..PPQDLAAEQSVLGGMLLSKDA...IADVLERLRPGDFYRPAHQNVY 
REMARK GP:MLCB1913_11            25 ..PPQDLAAEQSVLGGMLLSKDA...IADVLERLRSGDFYRPAHQNVY 
REMARK GP:RNDNAB_1               45 RVPPQAVELEQAVLGAMLIEPEA...IPRALEILTPEAFYDGRHQRIF 
REMARK GP:AF006675_1             44 RVPPQAVELEQAVLGAMLIEPEA...IPRALEILTPEAFYDGRHQRIF 
REMARK SW:DNAB_HAEIN             55 .IPPHSTEAEQAVLGGIMLSNQH...WDGIAERVIADDFYTFQHRLIF 
REMARK GP:AE001191_1             14 KIPPHNLEAERAVLGAVLLDDSA...LSTATEQLSASSFYSAAHQRIF 
REMARK SW:DNAB_SYNY3              7 .LPPQNIEAEECILGGILLDPEA...MGRIIDLLVVDAFYVKAHRLIY 
REMARK SW:DNAB_ODOSI             18 ...PHNFLAEKIVLSSLLISSEA...IETCLRSLTIDAFYFKNHREIY 
REMARK GP:AE001323_3             17 ...PNSKESEMIVLGCMLTSVNH...LNLAANLLQEDDFYFLEHRIIF 
REMARK PIR:S43527                 8 ..PPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKIIF 
REMARK PIR:G70113                17 ........AEKAVISSIFYNSDK...IEQIAFHVRADDFYNETHKLIF 
REMARK GP:SCPSCL_2               15 .......EAEDAVLGTLLRPEARDL.VPDLVSALAPTDFREPRYGELW 
REMARK GP:AE000742_2             13 ........AERAVLGSMLEDPEN...IPLVLEYLKEEDFCIDEHKLLF 
REMARK GP:BSPP1GENM_80           15 ........AEQAVLGSILTEPEL...IKECP..LTPEHFSPGKHFNIY 
REMARK PIR:B64690                14 .........ERIVLSGIVLANHK...IEEVHSVLEPSDFYYPPNGLFF 
REMARK    
REMARK t0056.pep                 47 TEMARLQES.GSPIDLITLAESLERQGQL.......DSVGGFAYLAELSK 
REMARK GP:ECODNABA_1             70 TEMARLQES.GSPIDLITLAESLERQGQL.......DSVGGFAYLAELSK 
REMARK SW:DNAC_BACSU             53 NAMLVLGDR.GEPVDLVTVTSELANTDLL.......EEVGGISYLTDIAN 
REMARK SW:DNAB_ECOLI             70 TEMARLQES.GSPIDLITLAESLERQGQL.......DSVGGFAYLAELSK 
REMARK PIR:A32011                69 TEMGRLQES.GSPIDLITLAESLERQGQL.......DSVGGFAYLAELSK 
REMARK SW:DNAB_SALTY             70 TEMGRLQES.GSPIDLITLAESLERQGQL.......DSVGGFAYLAELSK 
REMARK SW:DNAB_MYCLE             68 DAILDLYGR.GEPADAVTVAAELDRRGLL.......RRIGGAPYLHTLIS 
REMARK SW:DNAB_MYCTU             67 DAILDLYGR.GEPADAVTVAAELDRRGLL.......RRIGGAPYLHTLIS 
REMARK GP:MTCY21D4_19            67 DAILDLYGR.GEPADAVTVAAELDRRGLL.......RRIGGAPYLHTLIS 
REMARK GP:MLCB1913_11            68 DAILDLYGR.GEPADAVTVAAELDRRGLL.......RRIGGAPYLHTLIS 
REMARK GP:RNDNAB_1               90 RAIVRLFEQ.NRGVDLLTVTEELRRTGEL.......EQAGDTIYLSELTT 
REMARK GP:AF006675_1             89 RAIVRLFEQ.NRGVDLLTVTEELRRTGEL.......EQAGDTIYLSELTT 
REMARK SW:DNAB_HAEIN             99 TEMEHLMRN.QSPIDLITLDQALRSRGVS.......DEVGGFAYLAELSN 
REMARK GP:AE001191_1             59 QALVELSDL.GQRPDILVLSEHLRSCEAL.......DFVGGSAYVASLTD 
REMARK SW:DNAB_SYNY3             51 EAMLSLHGQ.SQPTDLMSVSSWLQDHHHF.......EAIGGMVKLTQLLD 
REMARK SW:DNAB_ODOSI             60 KAILIMYKK.NTPIDIVTLNTFLQNQGLL.......PKIGGIKVLIELVN 
REMARK GP:AE001323_3             59 RVLQDAFKS.DRPMDPHLTGEELKRRDQL.......NIIGGPSYLITLSE 
REMARK PIR:S43527                54 EEITRMHRE.QKPVDGLTLFDELERKSLT.......ASVGGFAYIAEIAK 
REMARK PIR:G70113                54 KAMVSLYEK.RENIDPITVFEEVSKHVSKTQLLIKKDLINLPDYLDSLSV 
REMARK GP:SCPSCL_2               55 DLLASLWAR.GTPCDPVTVSAVLRKRGDL.......ERIGGAVWLHALHD 
REMARK GP:AE000742_2             50 RVLTNLWSEYGNKLDFVLIKDHLEKKNLL.......QKIP.IDWLEELYE 
REMARK GP:BSPP1GENM_80           50 FTMQDLDRK.GQSVDFTSIAARVGEK..L.......PQLGGFGYLTELAA 
REMARK PIR:B64690                50 EIALKLHEE.DCPIDENFIRQKMPKDKQI.......KEEDLVAIFAA... 
REMARK    
REMARK t0056.pep                 89 NTPSAANISAYADIVRERAVVREMIS 
REMARK GP:ECODNABA_1            112 NTPSAANISAYADIVRERAVVREMIS 
REMARK SW:DNAC_BACSU             95 SVPTAANIEYYAKIVEEKSILRRLI. 
REMARK SW:DNAB_ECOLI            112 NTPSAANISAYADIVRERAVVREMIS 
REMARK PIR:A32011               111 NTPSAANISAYADIVRERAVVRDMIA 
REMARK SW:DNAB_SALTY            112 NTPSAANISAYADIVRERAVVRDMIA 
REMARK SW:DNAB_MYCLE            110 TVPTAANAGYYAGIVAEKALLRRLVE 
REMARK SW:DNAB_MYCTU            109 TVPTAANAGYYASIVAEKALLRRLVE 
REMARK GP:MTCY21D4_19           109 TVPTAANAGYYASIVAEKALLRRLVE 
REMARK GP:MLCB1913_11           110 TVPTAANAGYYAGIVAEKALLRRLVE 
REMARK GP:RNDNAB_1              132 RVASAANVEYHARIIAEKALLRRMIE 
REMARK GP:AF006675_1            131 RVASAANVEYHARIIAEKLLRRMI.. 
REMARK SW:DNAB_HAEIN            141 NTPNAINILAYADIVREKAILRELIS 
REMARK GP:AE001191_1            101 AVPSAANVEYYTRIVCDAAMRRSLL. 
REMARK SW:DNAB_SYNY3             93 RTISAVNIDRFAALIMDKYLRRQLIA 
REMARK SW:DNAB_ODOSI            102 QLPNLVYLEEYIRIIQDKYVRRSLI. 
REMARK GP:AE001323_3            101 FAGTSAYIEEYAEIIRSKSILRKMIQ 
REMARK PIR:S43527                96 NTPSAANIVAYAMQVRETAMER.... 
REMARK PIR:G70113               103 YLPTDRTINVYAKIVKEQSVRRSILN 
REMARK GP:SCPSCL_2               97 AVPTTAHALRYAEIVAEESRWRALLA 
REMARK GP:AE000742_2             92 EAVSPDTLEEVCKIVKQRSAQRAIIQ 
REMARK GP:BSPP1GENM_80           90 SVASTTTFKQHCQTVSEYFQKRKAIS 
REMARK PIR:B64690                89 ..SPIDNIEAYVEEIKNASIKRKLFG 
REMARK    
REMARK  
REMARK Search results:  
REMARK  alignment method = FIT_PRF 
REMARK          Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1dar                +   6.40   3.19  619. !  Resolution=2.40  619 residues MOL_ID: 1; 
REMARK pdb90:3ladA               +   5.92   3.00  472. ! Resolution=2.20  472 residues DIHYDROLIPOAMIDE DEHYDROGENASE (E.C.1.8.1.4) 
REMARK pdb90:1ordA               +   5.57   2.85  730. ! Resolution=3.00  730 residues MOL_ID: 1; 
REMARK pdb90:1hdgO               +   5.24   2.71  332. ! Resolution=2.50  332 residues HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0056.pep     2 KVPPHSIEAEQSVLGGLMLDNERW...DDVAERVVADDFYTRPHRHIFTE 
REMARK 1DAR        345 GDLGAVVGLKETITGDTLVGEDAPRVILESE...EDPTFRVSTHQTIISG 
REMARK    
REMARK t0056.pep    49 MARLQES.GSPIDLITLAESLERQGQL....................... 
REMARK 1DAR        392 MGELLKR.EFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHV 
REMARK    
REMARK t0056.pep    75 .......DSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMIS 
REMARK 1DAR        441 KIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIG 
REMARK    
REMARK    
MODEL 1  
PARENT 1DAR 
K  24    G 372 
V  25    D 373 
P  26    L 374 
P  27    G 375 
H  28    A 376 
S  29    V 377 
I  30    V 378 
E  31    G 379 
A  32    L 380 
E  33    K 381 
Q  34    E 382 
S  35    T 383 
V  36    I 384 
L  37    T 385 
G  38    G 386 
G  39    D 387 
L  40    T 388 
M  41    L 389 
L  42    V 390 
D  43    G 391 
N  44    E 392 
E  45    D 393 
R  46    A 394 
W  47    P 395 
D  48    L 399 
D  49    E 400 
V  55    E 434 
A  56    D 435 
D  57    P 436 
D  58    T 437 
F  59    F 438 
Y  60    R 439 
T  61    V 440 
R  62    S 441 
P  63    T 442 
R  65    Q 448 
H  66    T 449 
I  67    I 450 
F  68    I 451 
T  69    S 452 
E  70    G 453 
M  71    M 454 
A  72    G 455 
R  73    E 456 
Q  75    L 466 
E  76    K 467 
S  77    R 468 
G  78    E 469 
S  79    F 470 
P  80    K 471 
I  81    V 472 
D  82    D 473 
L  83    A 474 
I  84    N 475 
T  85    V 476 
L  86    G 477 
A  87    K 478 
E  88    P 479 
S  89    Q 480 
L  90    V 481 
E  91    A 482 
R  92    Y 483 
Q  93    R 484 
G  94    E 485 
Q  95    T 486 
L  96    I 487 
D  97    P 518 
S  98    R 519 
V  99    G 520 
G 100    S 521 
G 101    G 522 
F 102    F 523 
A 103    E 524 
Y 104    F 525 
L 105    V 526 
A 106    N 527 
E 107    A 528 
L 108    I 529 
S 109    V 530 
K 110    G 531 
N 111    G 532 
T 112    V 533 
P 113    I 534 
S 114    P 535 
A 115    K 536 
A 116    E 537 
N 117    Y 538 
I 118    I 539 
S 119    P 540 
A 120    A 541 
Y 121    V 542 
A 122    Q 543 
D 123    K 544 
I 124    G 545 
V 125    I 546 
R 126    E 547 
E 127    E 548 
R 128    A 549 
A 129    M 550 
V 130    Q 551 
V 131    S 552 
R 132    G 553 
E 133    P 554 
M 134    L 555 
I 135    I 556 
S 136    G 557 
TER 
END 
